bioRxivNeurosciencePreprint
Rearing conditions bidirectionally modulate cognitive abilities and AP-1 signaling in hippocampal neurons in a cell type-specific manner.
Marta Alaiz-NoyaiD, Federico MiozzoiD, Miguel Fuentes-RamosiD, Magdalena A. MachnickaiD, Marcelina KurowskaiD, Macarena L Herrera, Beatriz del BlancoiD, Sergio NiñerolaiD, Isabel Bustos-Martínez, Bartek WilczyńskiiD, Ángel BarcoiD
Abstract
Environmental conditions profoundly influence cognitive development, particularly during early life. Transcriptional and epigenetic mechanisms may serve as molecular substrates for the lasting effects of environmental enrichment (EE) and impoverishment (IE) on cognitive abilities and hippocampal function. However, the specific gene programs driving these changes remain largely unknown. In this study, EE and IE modulated the cognitive abilities of mice in opposing directions. By combining hippocampal microdissection and genetic tagging of neuronal nuclei with genome-wide analyses of gene expression, chromatin accessibility, histone acetylation, and DNA methylation, we uncovered profound differences in the transcriptional and epigenetic profiles of CA1 pyramidal neurons and dentate gyrus (DG) granule neurons. These analyses revealed cell type-specific genomic changes induced by EE and IE, highlighting distinct patterns of neuroadaptation within each population. This multiomic screen pinpointed the activity-regulated transcription factor AP-1 as a crucial mediator of neuroadaptation to conditions during early life in both cell types, albeit through distinct downstream mechanisms. Conditional deletion of Fos, a core AP-1 subunit, in excitatory neurons hampered EE-induced cognitive enhancement, further underscoring the pivotal role of this transcription factor in neuroadaptation.
- organism: mouse
- assay: bulk RNA-seq
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Postnatal environmental enrichment enhances memory by shaping hippocampal-prefrontal theta and gamma rhythms in diploid and trisomic female mice
Maria Alemany-González, Marta Vilademunt, … Maria Victoria Puig·bioRxiv·Feb 16, 2022
- Environmental enrichment induces epigenomic and genome organization changes relevant for cognitive function
Sergio Espeso‐Gil, Aliaksei Z. Holik, … Stephan Ossowski·Frontiers in Molecular NeurosciencePeer-reviewed·May 5, 2021
- Regions with intermediate DNA methylation are epigenomic hotspots governing behavioral adaptation to changing environments
Elizabeth Brindley, Faten Taki, … Miklós Tóth·bioRxiv·Dec 11, 2022
- Cognitive enrichment improves spatial memory and alters hippocampal synaptic connectivity in a mouse model for early-life stress
Justin L. Shobe, Elham Ghanbarian, … Bruce L. McNaughton·Frontiers in Cellular NeurosciencePeer-reviewed·Oct 17, 2025
- Novel environment exposure drives temporally defined and region-specific chromatin accessibility and gene expression changes in the hippocampus
Lisa Traunmüller, Erin E. Duffy, … Michael E. Greenberg·Nature CommunicationsPeer-reviewed·Aug 21, 2025
- Electrophysiological properties and synaptic activity of the mouse hippocampal CA1 neurons during postnatal development
Igor Nagula, Emilija Kavalnyte, … Aidas Alaburda·bioRxiv·Jul 22, 2026