bioRxivCancer Biology
CancerGD: a resource for identifying and interpreting genetic dependencies in cancer
Abstract
Genes whose function is selectively essential in the presence of cancer associated genetic aberrations represent promising targets for the development of precision therapeutics. Here we present CancerGD (www.cancergd.org), a resource that integrates genotypic profiling with large-scale loss-of-function genetic screens in tumor cell lines to identify such genetic dependencies. CancerGD provides tools for searching, visualizing, and interpreting these genetic dependencies through the integration of functional interaction networks.
- organism: human
- assay: bulk RNA-seq
- research focus: drug response / drug discovery
- research focus: gene regulatory network inference
- approach: experimental assay
- approach: statistical model
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