Temporal Dynamics of Neocortical Development in Organotypic Mouse Cultures: A Comprehensive Analysis
Aniella BakiD, Katharina SchmiediD, M. JakobiD, Francesco BedogniiD, Olivia A SquireiD, Birgit Gittel, Maik JesinghauseniD, Kerstin D SchünemanniD, Yvonne G. WeberiD, Björn M. KampaiD, Karen M. J. van LooiD, Henner KochiD
Abstract
Murine organotypic brain slice cultures have been widely used in neuroscientific research and are offering the opportunity to study neuronal function under normal and disease conditions. Despite the brought application, the mechanisms governing the maturation of immature cortical circuits in vitro are not well understood. In this study, we present a detailed investigation into the development of the neocortex in vitro. Utilizing a holistic approach, we studied organotypic whole-hemisphere brain slice cultures from postnatal mice and tracked the development of the somatosensory area over a five-week period. Our analysis revealed the maturation of passive and active intrinsic properties of pyramidal cells together with their morphology, closely resembling in vivo development. Detailed Multi-electrode array (MEA) electrophysiological assessments and RNA expression profiling demonstrated stable network properties by two weeks in culture, followed by the transition of spontaneous activity towards more complex patterns including high-frequency oscillations. However, weeks 4 and 5 exhibited increased variability and initial signs of neuronal loss, highlighting the importance of considering developmental stages in experimental design. This comprehensive characterization is vital for understanding the temporal dynamics of the neocortical development in vitro, with implications for neuroscientific research methodologies, particularly in the investigation of diseases such as epilepsy and other neurodevelopmental disorders.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Structured dynamics of neural activity across developing neocortex
James B Ackman, Hongkui Zeng, Michael C Crair·bioRxiv·Dec 5, 2014
- Preserved functions with profound morphological reorganization in human organotypic cultures
Estilla Zsófia Tóth, Rebeka Stelcz, … Lúcia Wittner·bioRxiv·May 12, 2026
- Nested oscillatory dynamics in cortical organoids model early human brain network development
Cleber A. Trujillo, Richard Gao, … Alysson Renato Muotri·Cell stem cellPeer-reviewed·Aug 29, 2019
- A transient postnatal quiescent period precedes emergence of mature cortical dynamics
Soledad Domínguez, Liang Ma, … Jennifer N. Gelinas·eLifePeer-reviewed·Jul 23, 2021
- Single Cell transcriptional analysis of ex vivo models of cortical and hippocampal development identifies unique longitudinal trends
Daniel K. Krizay, David B. Goldstein, Michael J. Boland·bioRxiv·Dec 11, 2022
- Flexible 3D multimodal organoid interface reveals functional subnetworks and coordinated circuit activity in cortical organoids
Madison N. Wilson, Elizabeth K. Kharitonova, … Duygu Kuzum·bioRxiv·Oct 8, 2026