bioRxivBiochemistryPreprint
A cinnamyl alcohol dehydrogenase (CAD) like enzyme leads to a branch in the shikonin biosynthetic pathway in Arnebia euchroma
R. Wang, C. Liu, S. Wang, J. Sun, J. Guo, C. Lyu, C. Kang, X. Wan, L. Shi, J. Wang, L. Huang, L. Guo
Abstract
Shikonin derivatives are natural naphthoquinone compounds and the main bioactive components produced by several boraginaceous plants, such as Lithospermum erythrorhizon and Arnebia euchroma. Phytochemical researches utilizing L. erythrorhizon and A. euchroma cultured cells both indicate the existence of a competing route branching out from the shikonin biosynthetic pathway toward benzo/hydroquinones. A previous study has shown that the branch point is a putative alcohol dehydrogenase converting (Z)-3-hydroxygeranylhydroquinone [(Z)-3-OH-GHQ] to an aldehyde intermediate (E)-3-oxo-GHQ. However, the enzyme involved in the branch reaction is not characterized at the molecular level yet. In this study, we clone a candidate gene belonging to the cinnamyl alcohol dehydrogenase (CAD) family, AeHGO, through coexpression analysis of transcriptome data sets of shikonin-proficient and shikonin-deficient cell lines of A. euchroma. In biochemical assays, purified AeHGO protein reversibly oxidizes (Z)-3-OH-GHQ to produce (E)-3-oxo-GHQ followed by reversibly reducing (E)-3-oxo-GHQ to (E)-3-OH-GHQ, resulting in an equilibrium mixture of the three compounds. Time course analysis and kinetic parameters show that the reaction with (Z)-3-OH-GHQ is about twice as efficient as with (E)-3-OH-GHQ, which leads to the predominance of (E)-3-OH-GHQ and (E)-3-oxo-GHQ in the equilibrium mixture. According to a previous report, (E)-3-oxo-GHQ can be converted to deoxyshikonofuran, a hydroquinone metabolite produced by boraginaceous plants. Considering there is a competition for accumulation between shikonin derivatives and benzo/hydroquinones in both L. erythrorhizon and A. euchroma cultured cells, AeHGO is supposed to play an important role in the metabolic regulation of shikonin biosynthetic pathway.
- organism: Arabidopsis
- assay: proteomics
- research focus: cell type annotation
- approach: biophysical modeling
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- CRISPR/Cas9-mediated genome editing reveals the involvement of a polyphenol oxidase in the shikonin-specific biosynthesis in Lithospermum erythrorhizon
Kohei Nakanishi, Yuki Takano, … Kazufumi Yazaki·Plant and Cell PhysiologyPeer-reviewed·May 28, 2026
- Integrative analysis of the shikonin metabolic network identifies new gene connections and reveals evolutionary insight into shikonin biosynthesis
T. Suttiyut, R. P. Auber, … J. R. Widhalm·bioRxiv·Jun 30, 2021
- Neofunctionalized carbonic anhydrases in the biosynthesis of neuroactive plant alkaloids
R. S. Nett, Y. Dho, … E. S. Sattely·bioRxiv·Nov 1, 2022
- Benzaldehyde Synthases Are Encoded by Cinnamoyl-CoA Reductase Genes in Cucumber (Cucumis sativus L.)
- Emergence of a proton exchange-based isomerization and lactonization mechanism in the plant coumarin synthase COSY
C. Y. Kim, A. J. Mitchell, … J.-K. Weng·bioRxiv·Jul 19, 2022
- Biosynthetic Origin of the Methoxy Group in Quinine and Related Cinchona Alkaloids
Blaise Kimbadi Lombe, Tingan Zhou, … Sarah Ellen O'Connor·Angewandte ChemiePeer-reviewed·Nov 7, 2024