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MicrobiologyThe Lancet Infectious Diseases
Peer-reviewed journal article

Virological characteristics of the SARS-CoV-2 JN.1 variant

Yu KakuiD, Kaho OkumuraiD, Miguel Padilla‐BlancoiD, Yusuke Kosugi, Keiya Uriu, Alfredo A. HinayiD, Chen LuoiD, Arnon PlianchaisukiD, Kouji KobiyamaiD, Ken J. IshiiiD, Jiří ZahradníkiD, Jumpei ItoiD, Kei SatoiD

Abstract

The SARS-CoV-2 BA.2.86 lineage, first identified in August 2023, is phylogenetically distinct from the currently circulating SARS-CoV-2 Omicron XBB lineages, including EG.5.1 and HK.3. Comparing to XBB and BA.2, BA.2.86 carries more than 30 mutations in the spike (S) protein, indicating a high potential for immune evasion. BA.2.86 has evolved and its descendant, JN.1 (BA.2.86.1.1), emerged in late 2023. JN.1 harbors S:L455S and three mutations in non-S proteins. S:L455S is a hallmark mutation of JN.1: we have recently shown that HK.3 and other "FLip" variants carry S:L455F, which contributes to increased transmissibility and immune escape ability compared to the parental EG.5.1 variant. Here, we investigated the virological properties of JN.1.

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