bioRxivCancer Biology
Mice developing mammary tumors evolve T cell sequences shared with human breast cancer patients
M. Gordin, H. Philip, A. Zilberberg, M. Gidoni, R. Margalit, C. Clouser, K. Adams, F. Vigneault, I. R. Cohen, G. Yaari, S. Efroni
Abstract
Cancer immunotherapy by checkpoint blockade proves that an effective immune response to a tumor can be induced clinically. However, little is known about the evolution of tumor-associated T-cell receptor (TCR) repertoires without intervention. Here we studied TCR repertoire evolution in mice spontaneously developing mammary tumors; we sequenced peripheral blood alpha and beta TCRs of CD4+CD62L+CD44- T cells monthly for 8 months in 10 FVB/NJ mice transgenic at the Erbb2 locus, all developing tumors; 5 FVB/NJ mice without the transgene were age-matched controls. Sequences were either private (restricted to one mouse) or public (shared among mice); public sequences were either exclusive to the tumor group or inclusive among different groups. We now report that 1), public AA sequences were each encoded by many different nucleotide sequences (NT) recombinations (convergent recombination; CR); 2) mice developing tumors evolved tumor-exclusive public sequences, derived initially from private or from inclusive public sequences; and 3) tumor-exclusive public sequences in mice were also present among published public TCR sequences from human breast cancer patients. These cross-species tumor-exclusive TCR sequences manifested high CR; but the AA sequences shared by mice and humans did not share NT sequences. Thus, tumor-exclusive TCR AA sequences across species are selected from different NT recombination events. The roles of tumor-exclusive TCR repertoires in advancing or inhibiting tumor development and the effects of tumor immunotherapy on these T cells remain to be seen.
- organism: mouse
- assay: CITE-seq
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: cell-cell communication
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- T cell receptor (TCR) repertoire analysis reveals a highly conserved TCR repertoire in a bilateral tumor mouse model
M. Tsunoda, H. Aoki, … S. Ueha·bioRxiv·May 13, 2021
- Tracking antigen-specific T cell response to cancer immunotherapy
Irina A Shagina, Tatyana O Nakonechnaya, … George Vladimirovich Sharonov·Cancer Immunology ResearchPeer-reviewed·Mar 17, 2026
- T-cell receptor sequencing of early stage breast cancer tumors identifies altered clonal structure of the T-cell repertoire
J. F. Beausang, A. J. Wheeler, … S. R. Quake·bioRxiv·Aug 4, 2017
- Spatial Compartmentalization of TCR Repertoires Between Primary Melanomas and Sentinel Lymph Nodes Reveals Distinct Clonal Architectures and Shared Antigen Recognition
Simo Kitanovski, Nalini Srinivas, … Jürgen Christian Becker·bioRxiv·Jul 8, 2026
- Immunotherapy of CT26 murine tumors is characterized by an oligoclonal response against the AH1 tumor rejection antigen
P. Probst, M. Stringhini, D. Neri·bioRxiv·Oct 2, 2019
- The landscape of antigen-specific T cells in human cancers
Bo Li, Longchao Liu, … Yang‐Xin Fu·bioRxiv·Nov 1, 2018