Quantifying cell transitions in C. elegans with data-fitted landscape models
Elena Camacho-AguilariD, Aryeh WarmflashiD, David A. J. RandiD
Abstract
Increasing interest has emerged in new mathematical approaches that simplify the study of complex differentiation processes by formalizing Waddingtons landscape metaphor. However, a rational method to build these landscape models remains an open problem. Building on pioneering work by Corson and Siggia (2012, 2017) we study vulval development in C. elegans by developing a framework based on Catastrophe Theory (CT) and approximate Bayesian computation (ABC) to build data-fitted landscape models. We first identify the candidate qualitative landscapes, and then use CT to build the simplest model consistent with the data, which we quantitatively fit using ABC. The resulting model suggests that the underlying mechanism is a quantifiable two-step decision controlled by EGF and Notch-Delta signals, where a non-vulval/vulval decision is followed by a bistable transition to the two vulval states. This new model fits a broad set of data and makes several novel predictions.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 29
- FWCI
- 1.41
- Field percentile
- top 19%
- Organism
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Quantitative guiding of developmental cell fate transitions using a dynamical landscape model
Ismail Hajji, Francis Corson, Wolfgang Keil·bioRxiv·Nov 16, 2024
- A landscape model for cell fate decisions during mesoendoderm differentiation in C. elegans based on Wnt dynamics
Shyr-Shea Chang, Zhirong Bao, Eric D. Siggia·bioRxiv·Jun 9, 2021
- Computable Early C. elegans Embryo with a Data-driven Phase Field Model
Xiangyu Kuang, Guoye Guan, … Lei Zhang·bioRxiv·Dec 13, 2020
- Quantitative Resolving Cell Fate in the Early Embryogenesis of Caenorhabditis elegans
Ruiqi Xiong, Yang Su, … Ping Ao·bioRxiv·Oct 25, 2024
- Generative epigenetic landscapes map the topology and topography of cell fates
Victoria Mochulska, Paul François·Proceedings of the National Academy of SciencesPeer-reviewed·Dec 9, 2025
- A quantitative landscape of cell fate transitions identifies principles of cellular decision-making
Meritxell Sáez, Robert A. Blassberg, … James Briscoe·bioRxiv·Mar 11, 2021