The conformational ensemble of an intrinsically disordered protein explains peak shapes under DNP conditions
Abstract
Elucidating the conformational preferences of regions of intrinsic disorder in biologically relevant contexts represents a frontier of structural biology. The sensitivity enhancements conferred by DNP enable structural studies of proteins in native contexts by MAS NMR. However, DNP requires low temperatures which results in broad peaks, particularly for for regions of intrinsic disorder. We describe an approach to predict and interpret peak shapes for frozen regions of intrinsic disorder in terms of dihedral angle populations. We demonstrate the method using the protein a-synuclein. This approach can be used to obtain experimental structural restraints for regions of intrinsic disorder in both simplified and biological settings, providing information that eludes characterization by diffraction-based methods as well as solution-state NMR spectroscopy and molecular dynamics due to molecular size limitations.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Structural context modulates the conformational ensemble of the intrinsically disordered amino terminus of α-synuclein
Rania Dumarieh, Dominique Lagasca, … Kendra K. Frederick·Journal of the American Chemical SocietyPeer-reviewed·Mar 27, 2025
- Spatially resolved DNP-assisted NMR illuminates the conformational ensemble of α-synuclein in intact viable cells.
J. Kragelj, R. Ghosh, … K. K. Frederick·bioRxiv·Oct 24, 2023
- Linear discriminant analysis reveals hidden patterns in NMR chemical shifts of intrinsically disordered proteins
J. A. Romero, P. Putko, … A. Zawadzka-Kazimierczuk·bioRxiv·Jun 8, 2022
- Structural characterization of an intrinsically disordered protein complex using integrated small-angle neutron scattering and computing
S. H. Chen, K. L. Weiss, … D. Bhowmik·bioRxiv·Dec 19, 2022
- Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations
L. M. Pietrek, L. S. Stelzl, G. Hummer·bioRxiv·Aug 9, 2019
- SpinForecast: chain-free probabilistic backbone assignment of intrinsically disordered proteins from NMR chemical shifts
James T. Eaton, Jasmine Cornish, … Gabriella T. Heller·bioRxiv·Aug 5, 2026