Sign in
Systems BiologyCell Systems
Peer-reviewed journal article

Cellular dialogues that enable self-organization of dynamic spatial patterns

Yiteng DangiD, Douwe A. J. GrundeliD, Hyun YoukiD

Abstract

Cells form spatial patterns by coordinating their gene expressions. How a group of mesoscopic numbers (hundreds-to-thousands) of cells, without pre-defined morphogens and spatial organization, self-organizes spatial patterns remains incompletely understood. Of particular importance are dynamic spatial patterns - such as spiral waves that perpetually move and transmit information over macroscopic length-scales. We developed an open-source, expandable software that can simulate a field of cells communicating with any number of cell-secreted molecules in any manner. With it and a theory developed here, we identified all possible \"cellular dialogues\" - ways of communicating with two diffusing molecules - and core architectures underlying them that enable diverse, self-organized dynamic spatial patterns that we classified. The patterns form despite widely varying cellular response to the molecules, gene-expression noise, and spatial arrangement and motility of cells. Three-stage, \"order-fluctuate-settle\" process forms dynamic spatial patterns: cells form long-lived whirlpools of wavelets that, through chaos-like interactions, settle into a dynamic spatial pattern. These results provide a blueprint to help identify missing regulatory links for observed dynamic-pattern formations and in building synthetic tissues.

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers
Citations
26
FWCI
1.76
Field percentile
top 15%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISOlimpio '17Perkins '20Ramalho '21Wang '22Toda '26Eidi '23
69% semantic matchBiophysics
E. P. Olimpio, H. Youk·bioRxiv·Jun 16, 2017