International Journal of Molecular SciencesGenomicsPeer-reviewed journal article
Transcriptional and Histone acetylation changes associated with CRE elements expose key factors governing the regulatory circuit in early stage of Huntington's disease models.
Sandra Arancibia-OpazoiD, Sebastián Contreras-RiquelmeiD, Mario Sánchez, Marisol Cisternas-OlmedoiD, René L. VidaliD, Alberto J. M. MartíniD, Mauricio SáeziD
Abstract
Huntingtons disease (HD) is a disorder caused by an abnormal expansion of trinucleotide CAG repeats within the huntingtin (Htt) gene. Under normal conditions, the CREB Binding Protein interacts with CREB elements and acetylates Lysine 27 of Histone 3 to direct the expression of several genes. However, mutant Htt causes depletion of CBP which in turn induces altered histone acetylation patterns and transcriptional deregulation. Here, we have studied differential expression analysis and H3K27ac variation in 4- and 6-week-old R6/2 mice as a model of juvenile HD. Analysis of differential gene expression and acetylation levels were integrated into Gene Regulatory Networks revealing key regulators involved in the altered transcription cascade. Our results show changes in acetylation and gene expression levels that are related to impaired neuronal development and key regulators clearly defined in 6-week-old mice are proposed to drive the downstream regulatory cascade in HD. Here we describe the first approach to determine the relationship among epigenetic changes in the early stages of HD. We determined the existence of changes in pre-symptomatic stages of HD, a starting point for early onset indicators of the progression of this disease.
- organism: mouse
- assay: bulk RNA-seq
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 10
- FWCI
- 1.21
- Field percentile
- top 24%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Selective inhibition of histone deacetylase 1 and 3 improves motor phenotype and alleviates transcriptional dysregulation in Huntington's disease mice
Katharina Hecklau, Susanne G. Mueller, … Ferah Yildirim·bioRxiv·Oct 13, 2020
- Altered Huntingtin-Chromatin Interactions Predict Transcriptional and Epigenetic Changes in Huntington's Disease Mouse Models
Jocelynn R. Pearl, Amol Carl Shetty, … Jeffrey B. Carroll·Disease Models & MechanismsPeer-reviewed·Apr 10, 2025
- Huntingtin loss-of-function contributes to transcriptional deregulation in Huntington's disease
Emilia Kozłowska, Agata Ciołak, … Agnieszka Fiszer·Cell & BiosciencePeer-reviewed·Jul 9, 2025
- HUNTINGTON DISEASE ALTERS THE PATTERNING OF NEOCORTICAL AREA IN MICE
Camille Lafage, Leslie Ratié, Sandrine Humbert·bioRxiv·May 14, 2026
- Histone hyperacetylation-linked upregulation of KRAB zinc finger proteins impedes glial differentiation in Huntington's disease
Peter Brøgger, John N. Mariani, … Steven A. Goldman·bioRxiv·Dec 2, 2025
- Expanded huntingtin CAG repeats disrupt the balance between neural progenitor expansion and differentiation in human cerebral organoids
Jinqiu Zhang, Jolene Ooi, … Mahmoud A. Pouladi·bioRxiv·Nov 26, 2019