E. coli

This paper demonstrates associative learning and memory erasure in a synthetic multicellular system using five E. coli strains communicating via a shared quorum-sensing signal.

The paper identifies Sgl{varphi}Cb5 as targeting MraY and shows convergent evolution between ssRNA and ssDNA phage Sgls.

The paper experimentally validates bacterial sense-to-sense genetic code variants using cell-free translation and proteomics, showing Trp incorporation at CGG codons in E. coli and Anaerococcus prevotii.

The paper introduces combined-FISH to quantify antibiotic resistance gene copy numbers in single bacterial cells and links them to host identity in complex environments.

The paper develops a computational model to show that Hsp70 chaperones only delay, not prevent, protein aggregation, depending on client-specific kinetic and thermodynamic properties.

This study investigates how ribosome-mediated protein folding imposes sequence constraints by analyzing mutations in E. coli DHFR using deep mutational scanning and fluorogenic sensors.

This study shows that reduced swimming motility accompanies B-lactam antibiotic resistance in E. coli through efflux mechanisms, with motility recovery after antibiotic removal.

This study demonstrates the transferability of homoserine lactone sensors between Bacillales bacteria, enabling programmable interphyla communication between Gram-negative and Gram-positive species.

The paper infers cell division parameters in E. coli under nonsteady growth conditions using single-cell size trajectories and time-resolved models.

This paper introduces a workflow that decouples quantification and identification in label-free top-down proteomics, improving proteome coverage and quantification precision.

This paper compares isothermal amplification methods (LAMP and RPA) with qPCR for detecting natterjack toad eDNA, finding RPA matches qPCR sensitivity while LAMP is less sensitive.

The paper introduces MIST, a framework that integrates single-molecule trajectory data with cellular context to improve molecular phenotyping in E. coli.

This study evaluates the precision of 13C metabolic flux analysis using different glucose tracers to estimate non-oxidative glycolysis fluxes in E. coli.

Hybrax simplifies hybrid bioprocess modeling by providing a framework that automates model setup and data handling, enabling reproducible and reusable models.

This study examines genomic features and resistance mechanisms in vancomycin-resistant Enterococcus faecalis ST525 isolates, revealing variable linezolid resistance despite a single mutational mechanism.

The paper identifies two groups of previously uncharacterized cargo genes in F plasmids of pathogenic E. coli, potentially contributing to virulence and antimicrobial targets.

This study demonstrates that an inducible CRISPR/Cas12a2 system can reduce bacterial growth and plasmid DNA in vitro and in vivo by targeting resistance transcripts.

The paper shows that MurJ, a Lipid II flippase, dynamically coordinates bacterial growth and division by transiently capturing at division sites during septal synthesis.