Genetic diversity and population structure

The paper introduces Feliplex, a multiplex microsatellite panel for simultaneous genotyping of multiple felid species, demonstrating its effectiveness in population monitoring and genetic structure analysis.

The paper examines the genetic structure and somatic mutation dynamics in Pando, a large clonal aspen, using sequencing across multiple tissues and spatial scales.

This study shows that population structure limits the effectiveness of GWAS and genomic prediction in black cottonwood, highlighting challenges in identifying causal loci and guiding assisted migration.

assessPool provides a pipeline for analyzing pooled sequencing data to infer population structure using FST values and other genomic statistics.

This study analyzes genetic diversity and phylogenetic relationships of Common Teal in Kashmir wetlands, revealing shared haplotypes with European populations and highlighting the region's ecological importance for migratory birds.

This study examines genetic variability and population structure of Cochliomyia hominivorax across South America, finding no center-periphery genetic diversity pattern and suggesting a complex metapopulation structure.

The paper introduces a method to calculate and interpret FST using sequence data, even with small sample sizes, and provides tools for implementation.

The paper assesses genetic diversity and demographic history of blue wildebeest in the Greater Liuwa Ecosystem using RAD-seq, finding moderate diversity and historical population expansions and declines.

This study examines population genetic structure in Himalayan langurs, finding limited genetic differentiation and strong gene flow along elevation gradients, suggesting no need to split them into multiple species.

eProbe designs capture probes for aeDNA to improve genetic analysis by significantly increasing target taxa recovery and genome coverage.

The paper examines genetic diversity and differentiation of a mycoheterotrophic orchid under urbanization, finding that past urban land-use impacts genetic erosion more than recent changes.

This study evaluates global genetic diversity protection by analyzing mitochondrial DNA and protected areas, identifying under-protected regions and their vulnerability to environmental changes.

This study assesses genomic variation in Fraxinus latifolia to inform conservation and EAB-resistance breeding strategies by analyzing population structure, diversity, and genomic offset across its range.

This study reveals the genetic diversity and lineage divergence of lions, identifying two clades and estimating divergence times, while challenging previous assumptions about Indian lion origins and conservation needs.

This paper extends the IICR to larger sample sizes and identifies limitations of demographic inferential methods using simulations and real data.

The paper assesses genetic health across Indian rhino populations to inform translocation strategies and management solutions for long-term survival.

The paper analyzes a hybrid zone between two North American toad species to assess the relationship between genetic divergence and selection, finding a weak correlation that suggests a history of secondary contact.

The paper investigates purifying selection in the rarest pine species, finding efficient purging of harmful variants despite extreme population size reduction.

This study identifies genes under selection in chimpanzee subspecies at a contact zone, linking environmental variation to genetic divergence and adaptation.

This study conducts a meta-analysis of genetic data from European saproxylic beetles to examine how historical and contemporary forest factors influence genetic diversity and population structure.

This study uses mtDNA and SNP data to trace the dispersal history of Parnassius glacialis across the Japanese Archipelago, identifying two expansion routes and four genetic barriers.

The paper examines how clownfish demographic responses to Pleistocene sea level changes are influenced by their host specialization, revealing resilience in generalists and bottlenecks in specialists.

This study develops a high-density SNP array for reindeer and finds that small, isolated populations show rapid genetic variation loss and increased inbreeding, threatening their viability.

The paper sequenced the genome of the extinct Dokdo sea lion to clarify its evolutionary history and genetic diversity before extinction.

This study identifies hierarchical genetic structure and adaptive divergence in Lates calcarifer across different regions and time periods.

The paper identifies genomic rearrangements in polar cod, showing their role in population divergence and potential local adaptation despite high gene flow.

The paper estimates hybridization load in Alpine ibex due to hybridization with domestic goats, finding increased loss-of-function mutations in hybrids compared to non-hybrids.

MAXTEMP improves precision of Ne estimation by leveraging multigenerational temporal data in genetic monitoring programs.

The paper examines how overlapping generations affect estimates of effective population size (Ne) and provides conditions under which unbiased estimates can be achieved.