CMVAE: Contrastive Supervision Improves Single-Omic Latent Manifold for Breast Cancer Survival Prognosis
Akash Singh, Adrian Kohut, John Michael Templeton, Anowarul Kabir
363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Akash Singh, Adrian Kohut, John Michael Templeton, Anowarul Kabir
Štěpán Wenke, Tobias Granwald, Alessandro Ferrante…·Marc Guitart-Masip
The paper develops an online decision-making battery to assess reinforcement learning and vigor, finding two distinct factors with moderate reliability and associations with mania but not depression.
Twinkle Bansal, Qingwei Zhu, Kunxin Luo, Iswar K Hariharan
This study identifies coding region changes in YAP1 that contribute to body size differences among rodents by showing increased growth-promoting activity in capybara YAP1 compared to mouse and vole YAP1.
Noelle Clark, Todd Montgomery, Gheed Nafea…·Julie Dangremond Stanton
This study examines how self-questions drive scientific reasoning in problem solving by analyzing think-aloud interviews of undergraduate life science students.
Ajay Pitambar Padvi, Alicia A Brunet, Annie L Miller, Livia S Carvalho
NEPTUNE identifies neuronal cell death markers from single-cell RNA-seq data, revealing non-apoptotic mechanisms in photoreceptor degeneration in rd1 mice.
Frank Hause, Alice Wedler-Geyer, Marcell Lederer…·Stefan Huettelmaier
The paper introduces DIFFRACT, a framework that uses local fractal dimension changes in protein interaction networks to detect functional reorganization, showing its utility in identifying novel biological roles in RAVER1-deficient cells.
GraphExperiment provides an R/Bioconductor package to store and manipulate high-dimensional quantitative data alongside associated networks in a unified framework.
Andriy Volkov, Evgeniya Pukhovaya, Catherine Albrecht, Dolf Weijers
This study identifies a polar targeting peptide in plants and reveals its evolutionary conservation and diversification within the SOSEKI protein family.
Daan Langendoen, Jan M. de Boer, Ilona Mager…·Mark G. Sterken
The paper identifies and characterizes a novel resistance haplotype, GpaXIbrc, from Solanum brevicaule that enhances resistance to G. pallida and demonstrates its effectiveness when stacked with other resistance haplotypes.
Barış Akar, Çağatay Elik, Tuğba Altıntaş
This paper evaluates the accuracy of structural MRI in classifying autism using leakage-free, site-aware, and externally validated machine learning methods across two ABIDE cohorts, finding modest performance.
Laura C Hinte, Ryoko Okamoto, Sophie Jansen…·Michael N Hall
This study develops a scalable method to generate functional adipoids from hiPSCs, which mimic human adipose tissue and can be used for metabolic disease research and drug screening.
Venkatesh Sridharan, Brian L Ross, Alessandro Lodesani
This study investigates how different molecular crowders affect the magnetic field-dependent fluorescence and recovery kinetics of MagLOV2 in E. coli lysate.
Ohm Prakash, Tomas B Voisin, Alzbeta Roeselova…·David Balchin
The paper identifies cyclic peptides that selectively bind to a cotranslational folding intermediate of β-galactosidase, revealing a druggable pocket formed during translation.
William Royle, Kohsheen Pandita, Rakshitha Rangarajan…·Daniela Delneri
The paper identifies Saccharomyces cerevisiae and Saccharomyces jurei hybrids with improved oenological traits for wine fermentation.
Sergio Oterino-Sogo, Nazim Mechkouri, Daniel Garcia-Ruano…·Macha Nikolski
SpaceBlocks is a workflow for reproducible, expert-supervised spatial transcriptomics analysis across platforms, identifying new cell types and differentially expressed genes in multiple datasets.
Minxue Liu, Tianyou Yao, Jonas Zahringer…·Prasanth Kannanganattu
This study uses MINFLUX nanoscopy to show nuclear speckles are hierarchically organized into dynamic nanoscale interaction networks that regulate molecular dynamics.
Noah Lopez, Julia C. Paoli, Duygu Payzin-Dogru…·Jessica L. Whited
This study identifies the pituitary as a conserved regulator of regeneration across vertebrates, showing its role in limb and fin regeneration through prolactin and growth hormone signaling.
Peter M. Gulleman, Yueli Zhang, Finnegan Clark…·Jason S. Park
This study shows that lymphangiogenesis is essential for healing and survival after laryngotracheal injury in mice, as blocking it leads to worse outcomes.
Yuki Nishio, Takayoshi Yamashita, Takashi Baba
The paper benchmarks sparse-to-transcriptome reconstruction models using high-expression profiles from mouse adrenal cells under sex and sex-steroid conditions, finding that gene-wise metrics and strong baselines are critical for evaluation.