Author

A. B. Rosenberg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1

Frequent Co-Authors

C. M. Roco· 3 shared G. Seelig· 3 shared M. Hirano· 3 shared A. Nelson· 2 shared C. Yan· 2 shared J. A. Theriot· 2 shared K. A. Gerbin· 2 shared R. Donovan-Maiye· 2 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCell Biology

C. M. Roco

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3 papers

Recent·Most cited

A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes

T. Grancharova, K. A. Gerbin, A. B. Rosenberg, C. M. Roco, J. Arakaki, C. DeLizzo, S. Q. Dinh, R. Donovan-Maiye, M. Hirano, A. Nelson, J. Tang, J. A. Theriot, C. Yan, V. Menon, S. P. Palecek, , R. N. Gunawardane

The paper analyzes gene expression changes in hiPSC-derived cardiomyocytes using single-cell RNA-seq, identifying key genes that mark differentiation stages and sources of variation across protocols and cell lines.

bioRxiv · Apr 22, 2021Cell Biology

Cell states beyond transcriptomics: integrating structural organization and gene expression in hiPSC-derived cardiomyocytes

K. A. Gerbin, T. Grancharova, R. Donovan-Maiye, M. C. Hendershott, J. Brown, S. Q. Dinh, J. L. Gehring, M. Hirano, G. R. Johnson, A. Nath, A. Nelson, C. M. Roco, A. B. Rosenberg, M. F. Sluzewski, M. P. Viana, , R. N. Gunawardane

The paper integrates gene expression and sarcomere organization in hiPSC-derived cardiomyocytes to predict subcellular states and reveal correlations between transcript abundance and structural patterns.

bioRxiv · May 26, 2020Cell Biology

Microbial single-cell RNA sequencing by split-pool barcoding

A. Kuchina, L. M. Brettner, L. Paleologu, C. M. Roco, A. B. Rosenberg, A. Carignano, R. Kibler, M. Hirano, R. W. DePaolo, G. Seelig

The paper introduces microSPLiT, a scRNA-seq method for bacteria, and applies it to Bacillus subtilis to reveal transcriptional states and novel gene expression patterns.

bioRxiv · Dec 11, 2019Bioengineering