Author

A. Paul Alivisatos

Tufts University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Bree B. AldridgeiD· 2 shared Nhi VaniD· 2 shared Artem SokoloviD· 1 shared Charles L. DaleyiD· 1 shared Dale Michael AndoiD· 1 shared Dirk SchnappingeriD· 1 shared Husain PoonawalaiD· 1 shared Joshua B. Wallach· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMicrobiology

Bree B. AldridgeORCID

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2 papers

Recent·Most cited

MicrobiologyAntimicrobial Agents and ChemotherapyPeer-reviewedApr 6, 2026

Antibiotic dose-response curves can measure antibiotic activity against Mycobacterium abscessus and Mycobacterium peregrinum

Husain Poonawala, Kathleen P. Davis, Myles E. Kenny…·Bree B. Aldridge

This study uses dose-response curves to measure antibiotic activity against Mycobacterium abscessus and Mycobacterium peregrinum, showing that IC50 and IC75 are more consistent than MIC.

2 citationstop 4%

humanexperimental assay

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MicrobiologyCell SystemsPeer-reviewedJul 29, 2025

Integration of multi-modal measurements identifies critical mechanisms of tuberculosis drug action

William C. Johnson, A. Paul Alivisatos, Trever C. Smith…·Bree B. Aldridge

This study introduces DECIPHAER, a tool that identifies critical mechanisms of tuberculosis drug action by integrating multi-modal data, revealing that respiration inhibition is more impactful than cell wall effects.

5 citations

spatial transcriptomicsimaging

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