Author

A. Sebe-Pedros

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 6 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 4 Assay:bulk RNA-seq· 2 Research Focus:chromatin & epigenetic regulation· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

X. Grau-Bove· 5 shared D. Moreira· 2 shared G. Torruella· 2 shared P. Lopez-Garcia· 2 shared A. de Mendoza· 1 shared A. Elek· 1 shared A. Neto· 1 shared A. Soubigou· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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5 shared papersEvolutionary Biology

X. Grau-Bove

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Author profile →

7 papers

Recent·Most cited

DNA methylation enables recurrent endogenization of giant viruses in an animal relative

L. A. Sarre, I. V. Kim, V. Ovchinnikov, M. Olivetta, H. Suga, O. Dudin, A. Sebe-Pedros, A. de Mendoza

The paper shows that DNA methylation in Amoebidium appalachense silences endogenized giant viruses, contributing 14% of its genes and revealing a dynamic process of viral integration and purging.

bioRxiv · Jan 8, 2024Evolutionary Biology

An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm

X. Grau-Bove, L. Subirana, L. Meister, A. Soubigou, A. Neto, A. Elek, O. Fornas, J. L. Gomez-Skarmeta, J. J. Tena, M. Irimia, S. Bertrand, A. Sebe-Pedros, H. Escriva

The paper constructs a single-cell RNA-seq atlas of amphioxus neurula stage to investigate the evolutionary origins of vertebrate head mesoderm.

bioRxiv · Sep 26, 2023Evolutionary Biology

Single cell atlas of Xenoturbella bocki highlights the limited cell-type complexity of a non-vertebrate deuterostome lineage

H. Robertson, A. Sebe-Pedros, B. Saudemont, Y. Loe Mie, A. Zakrzewski, X. Grau-Bove, M.-P. Mailhe, P. Schiffer, M. J. Telford, H. Marlow

This study presents a single-cell RNA-seq atlas of Xenoturbella bocki, revealing limited cell-type complexity and shared features with cnidarians and protostomes.

bioRxiv · Aug 18, 2022 · PreprintEvolutionary Biology

A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution

X. Grau-Bove, C. Navarrete, C. Chiva, T. Pribasnig, M. Anto, G. Torruella, L. J. Galindo, B. F. Lang, D. Moreira, P. Lopez-Garcia, I. Ruiz-Trillo, C. Schleper, E. Sabido, A. Sebe-Pedros

This study reconstructs the evolutionary history of eukaryotic chromatin by combining proteomics and phylogenetic analysis, revealing pre-eukaryotic origins of chromatin functions and eukaryotic innovations.

bioRxiv · Nov 30, 2021Evolutionary Biology

Orthology clusters from gene trees with Possvm

X. Grau-Bove, A. Sebe-Pedros

Possvm automates orthology cluster classification from gene trees using species overlap and MCL, achieving high precision and recall in benchmarking.

bioRxiv · May 3, 2021Evolutionary Biology

Tracking infection dynamics at single-cell level reveals highly resolved expression programs of a large virus infecting algal blooms

C. Ku, U. Sheyn, A. Sebe-Pedros, S. Ben-Dor, D. Schatz, A. Tanay, S. Rosenwasser, A. Vardi

The paper uses single-cell transcriptomics to track infection dynamics of a virus in algal blooms, identifying novel viral genetic programs and host transcriptome changes during infection.

bioRxiv · Sep 5, 2019 · PreprintMicrobiology

The aphelid-like phagotrophic origins of fungi

G. Torruella, X. Grau-Bove, D. Moreira, S. A. Karpov, J. Burns, A. Sebe-Pedros, E. Volcker, P. Lopez-Garcia

This study generates transcriptome data for an aphelid and uses phylogenomic analysis to suggest fungi evolved from a phagotrophic opisthosporidian ancestor.

bioRxiv · Aug 17, 2018Evolutionary Biology