Author

A. T. Szafran

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1

Frequent Co-Authors

M. A. Mancini· 2 shared A. Jalali· 1 shared A. M. Lentzsch· 1 shared A. Rivera-Tostado· 1 shared C. Coarfa· 1 shared C. D. Candler· 1 shared C. Herman· 1 shared C. Queitsch· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersCell Biology

M. A. Mancini

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2 papers

Recent·Most cited

SPACe (Swift Phenotypic Analysis of Cells): an open-source, single cell analysis of Cell Painting data

F. Stossi, P. K. Singh, M. Marini, K. Safari, A. T. Szafran, A. Rivera-Tostado, C. D. Candler, M. G. Mancini, E. A. Mosa, M. J. Bolt, D. Labate, M. A. Mancini

SPACe is an open-source tool for analyzing Cell Painting data, offering faster processing and better handling of cell-to-cell variation compared to existing software.

bioRxiv · Mar 21, 2024 · PreprintCell Biology

Bacteria-to-human protein networks reveal origins of endogenous DNA damage

J. Xia, L.-Y. Chiu, R. B. Nehring, M. A. Bravo Nunez, Q. Mei, M. Perez, Y. Zhai, D. M. Fitzgerald, J. P. Pribis, Y. Wang, C. W. Hu, R. T. Powell, S. A. LaBonte, A. Jalali, M. L. Matadamas Guzman, , S. M. Rosenberg

The paper identifies DNA-damaging proteins in E. coli and their human homologs, showing they promote endogenous DNA damage and are overrepresented in cancer drivers.

bioRxiv · Jun 26, 2018Cancer Biology