Author

Adam M Phillippy

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 4 Assay:whole-genome sequencing· 4 Approach:experimental assay· 3 Organism:E. coli· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:yeast· 2

Frequent Co-Authors

Sergey KoreniD· 4 shared Chen-Shan ChiniD· 2 shared Derek M Bickhart· 2 shared Jane M Landolin· 2 shared John A Hammond· 2 shared John C Schwartz· 2 shared Alessandra Crisa· 1 shared Alex R Hastie· 1 shared

Activity by Year

2014-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersBioinformatics

Sergey KorenORCID

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Author profile →

5 papers

Recent·Most cited

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

John C Schwartz, Mark S Gibson, Dorothea Heimeier, Sergey Koren, Adam M Phillippy, Derek M Bickhart, Timothy PL Smith, Juan F Medrano, John A Hammond

The paper compares the NK gene complex across mammals using new genome assemblies and annotations, revealing evolutionary patterns and balancing selection.

bioRxiv · Aug 16, 2016Genetics

Single-molecule sequencing and conformational capture enable de novo mammalian reference genomes

Derek M Bickhart, Benjamin D Rosen, Sergey Koren, Brian L Sayre, Alex R Hastie, Saki Chan, Joyce Lee, Ernest T Lam, Ivan Liachko, Shawn T Sullivan, Joshua N Burton, Heather J Huson, Christy M Kelley, Jana L Hutchison, Yang Zhou, , Timothy P.L. Smith

This paper presents a de novo mammalian genome assembly for the domestic goat using long-read sequencing, short-read validation, and chromatin interaction mapping, achieving high contiguity and resolving repetitive regions.

bioRxiv · Jul 18, 2016Genomics

Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing

Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James Drake, Jane M Landolin, Adam M Phillippy

The paper introduces MHAP, a method using locality-sensitive hashing to improve genome assembly from single-molecule sequencing, achieving high-quality assemblies for multiple organisms.

Nature Biotechnology · May 25, 2015Peer-reviewedBioinformatics

Long-read, whole genome shotgun sequence data for five model organisms

Kristi E Kim, Paul Peluso, Primo Baybayan, Patricia Jane Yeadon, Charles Yu, William Fisher, Chen-Shan Chin, Nicole A Rapicavoli, David R Rank, Joachim Li, David Catcheside, Susan E Celniker, Adam M Phillippy, Casey M Bergman, Jane M Landolin

The paper provides high-coverage SMRT sequencing datasets for five model organisms to support genome assembly and analysis.

Scientific Data · Nov 25, 2014Peer-reviewedGenomics

Automated ensemble assembly and validation of microbial genomes

Sergey Koren, Todd J Treangen, Christopher M Hill, Mihai Pop, Adam M Phillippy

The paper introduces iMetAMOS, an automated pipeline for ensemble genome assembly and validation, demonstrating its effectiveness on microbial genomes.

bioRxiv · Feb 7, 2014Bioinformatics