Author

Alex Beliaev

Pacific Northwest National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Synthetic Biology· 2 Plant Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:metabolomics· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Abby JergeriD· 2 shared Angela ContolesiiD· 2 shared James M. FulcheriD· 2 shared Niaz Bahar ChowdhuryiD· 2 shared Paul PiehowskiiD· 2 shared Alaina J. LaPanseiD· 1 shared Allan ScottiD· 1 shared August GeorgeiD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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2 shared papersPlant Biology

Abby JergerORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Multiomics dissection of the CO2-dependent fast growth of Picochlorum celeri

Yasin Torres-Tiji, Thayne S. Ekness, Devin A.J. Karns, Camilo Posso, Lye Meng Markillie, Kent Bloodsworth, Nathalie Munoz Munoz, Marina Gritsenko, Daniel MacLaughlin, Kaelyn Carpenter, Morgan K Hampton, Natalie Furrer, Alaina J. LaPanse, Hugh Mitchell, Vladislav Petyuk, , Matthew C. Posewitz

This study profiles multi-omics data in Picochlorum celeri under CO2 limitation, revealing a CO2-dependent switch in Rubisco subunits and extensive post-translational modifications.

bioRxiv · Sep 28, 2026 · PreprintPlant Biology

Lanthanide protein biosensors with a single ion-binding site

Isabella Nymann Westensee, Zhong Guo, Zhenling Cui, Chantal Ronacher, Maria Micaela Fiorito, Alex Beliaev, Kirill A. Alexandrov

This paper develops high-throughput assays for lanthanide-binding proteins using β-lactamase-based biosensors with single ion-binding sites, enabling in vitro and in vivo testing of Ln selectivity and survival.

bioRxiv · Aug 26, 2026 · PreprintSynthetic Biology

ChatGEM: An Agentic Architecture Enabling Interactive Simulation of Genome-Scale Metabolic Models

Niaz Bahar Chowdhury, August George, Sumit Purohit, Angela Contolesi, Erin Bredeweg, Jeffrey J. Czajka, Kelly G. Stratton, Yuqian Gao, Molly Stephenson, Joshua R. Elmore, Allan Scott, Damon T. Leach, Abby Jerger, Teresa Lemmon, Paul Piehowski, , Jaydeep P. Bardhan

ChatGEM enables interactive simulation of genome-scale metabolic models via natural language, improving performance and reducing execution time for complex tasks.

bioRxiv · Jul 21, 2026 · PreprintSystems Biology

Cellulase secretion by engineered Pseudomonas putida enables growth on cellulose oligomers.

Madeline R. Smith, Kaylee Moffitt, William Holdsworth, Carlos H. Luna‐Flores, Mansi Goyal, Alex Beliaev, Robert E. Speight, James B. Y. H. Behrendorff

This study engineers Pseudomonas putida to secrete cellulase enzymes, enabling growth on cellulose oligomers.

Applied Microbiology and Biotechnology · Nov 25, 2025Peer-reviewedSynthetic Biology