Author

Allan Scott

Pacific Northwest National LaboratoryORCID 0000-0002-7385-7633Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 2 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:metabolomics· 1 Research Focus:protein design· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Joshua R. ElmoreiD· 2 shared Abby JergeriD· 1 shared Adam M. GussiD· 1 shared Alex Beliaev· 1 shared Amanda M. RobertiD· 1 shared Angela ContolesiiD· 1 shared August GeorgeiD· 1 shared Brian H DarstiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersSynthetic Biology

Joshua R. ElmoreORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Conjugative serine recombinase engineering enables genome integration in transformation-resistant bacteria and bioproduction pathway prototyping

Michael S. Guzman, Cholpisit Kiattisewee, Amanda M. Robert, J.S. Comes, Ryan A. L. Cardiff, Allan Scott, Margaret Cook, Diego Alba Burbano, Stella Anastasakis, Sarah Grube, Kieran Heiberg, Brian H Darst, Daniel C. Howell, Gara N. Dexter, Robert G. Egbert, , James M. Carothers

This paper introduces cSAGE, a conjugation-based genome engineering platform that enables site-specific integration in transformation-resistant bacteria, demonstrating its utility in bioproduction pathway prototyping.

bioRxiv · Sep 1, 2026 · PreprintSynthetic Biology

ChatGEM: An Agentic Architecture Enabling Interactive Simulation of Genome-Scale Metabolic Models

Niaz Bahar Chowdhury, August George, Sumit Purohit, Angela Contolesi, Erin Bredeweg, Jeffrey J. Czajka, Kelly G. Stratton, Yuqian Gao, Molly Stephenson, Joshua R. Elmore, Allan Scott, Damon T. Leach, Abby Jerger, Teresa Lemmon, Paul Piehowski, , Jaydeep P. Bardhan

ChatGEM enables interactive simulation of genome-scale metabolic models via natural language, improving performance and reducing execution time for complex tasks.

bioRxiv · Jul 21, 2026 · PreprintSystems Biology