Author

Amlan Jyoti Naskar

Indian Institute of Science Bangalore

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Hemant Chandru NaikiD· 3 shared Srimonta GayeniD· 3 shared Lakshmi Sowjanya Bammidi· 2 shared Parichitran Ayyamperumal· 2 shared Akash Kalita· 1 shared Avinchal Manhas· 1 shared Dimple NotaniiD· 1 shared GS Bariha· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersGenetics

Hemant Chandru NaikORCID

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3 papers

Recent·Most cited

Deletion of Xist upstream sequences alters TAD interactions and leads to defects in Xist coating and expression

Sudeshna Majumdar, Lakshmi Sowjanya Bammidi, Hemant Chandru Naik, Avinchal Manhas, Runumi Baro, Akash Kalita, Amlan Jyoti Naskar, Sundarraj Nidharshan, GS Bariha, Dimple Notani, Srimonta Gayen

The paper shows that deleting Xist upstream sequences disrupts TAD organization, affects Xist expression, and leads to dysregulation of autosomal genes.

Genome Research · Aug 6, 2025Peer-reviewedGenetics

Single-cell allelic transcriptomic analysis unravels intratumoral gene expression heterogeneity linked to TNBC pathogenesis

Parichitran Ayyamperumal, Hemant Chandru Naik, Amlan Jyoti Naskar, Srimonta Gayen

This study uses single-cell RNA-sequencing to analyze allelic expression heterogeneity in TNBC, linking it to immune-surveillance and drug-resistance pathways.

bioRxiv · Apr 23, 2024 · PreprintCancer Biology

Chromatin states contribute to coordinated allelic transcriptional bursting to drive iPSC reprogramming

Parichitran Ayyamperumal, Hemant Chandru Naik, Amlan Jyoti Naskar, Lakshmi Sowjanya Bammidi, Srimonta Gayen

The paper investigates how chromatin states influence coordinated allelic transcriptional bursting during iPSC reprogramming and finds that chromatin accessibility correlates with allelic coordination.

Life Science Alliance · Feb 6, 2024Peer-reviewedGenetics