Author

Runumi Baro

Indian Institute of Science Bangalore

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genetics· 4

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Organism:mouse· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Assay:ChIP-seq· 2 Approach:experimental assay· 2

Frequent Co-Authors

Srimonta GayeniD· 4 shared Hemant Chandru NaikiD· 3 shared Avinchal Manhas· 2 shared Maniteja AravaiD· 2 shared Sudeshna MajumdariD· 2 shared Akash Kalita· 1 shared Amlan Jyoti Naskar· 1 shared Amritesh Sarkar· 1 shared

Activity by Year

2023-2025 · peak 2/yr

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10 top collaborators · 32 mutual co-author links

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4 shared papersGenetics

Srimonta GayenORCID

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4 papers

Recent·Most cited

The role of m6A RNA methylation in the maintenance of X-chromosome inactivation and X to autosome dosage compensation in early embryonic lineages

Hemant Chandru Naik, Runumi Baro, Amritesh Sarkar, Muralidhar Nayak, Kartik Sunagar, Srimonta Gayen

This study investigates the role of m6A RNA methylation in X-chromosome inactivation and X to autosome dosage compensation in early embryonic lineages, finding that m6A depletion has a minor effect on dosage compensation.

Stem Cell Reports · Dec 11, 2025Peer-reviewedGenetics

Deletion of Xist upstream sequences alters TAD interactions and leads to defects in Xist coating and expression

Sudeshna Majumdar, Lakshmi Sowjanya Bammidi, Hemant Chandru Naik, Avinchal Manhas, Runumi Baro, Akash Kalita, Amlan Jyoti Naskar, Sundarraj Nidharshan, GS Bariha, Dimple Notani, Srimonta Gayen

The paper shows that deleting Xist upstream sequences disrupts TAD organization, affects Xist expression, and leads to dysregulation of autosomal genes.

Genome Research · Aug 6, 2025Peer-reviewedGenetics

Lineage-specific dynamics of erasure of X-upregulation during inactive-X reactivation

Hemant Chandru Naik, Deepshikha Chandel, Sudeshna Majumdar, Maniteja Arava, Runumi Baro, Harshavardhan BV, Kishore Hari, Parichitran Ayyamperumal, Avinchal Manhas, Mohit Kumar Jolly, Srimonta Gayen

The paper investigates lineage-specific coordination of X-chromosome inactivation and active-X upregulation in female cells across different developmental contexts and identifies UTF1 as a mediator of X-upregulation erasure in some lineages.

Stem Cell Reports · Oct 31, 2024Peer-reviewedGenetics

Gene-specific reactivation of X-linked genes upon Xist loss is linked to the chromatin states in extraembryonic endoderm and epiblast stem cells

Maniteja Arava, S Majumdar, LS Sowjanya, HC Naik, Runumi Baro, Srimonta Gayen

The paper investigates how Xist loss affects X-linked gene reactivation in XEN and EpiSC, showing that chromatin states determine gene silencing stability.

bioRxiv · Oct 20, 2023 · PreprintGenetics