Author

Astrid Chanfon

University of Bern

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:mouse· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Alberto ValdeolivasiD· 2 shared Demeter TúrósiD· 2 shared Sven RottenbergiD· 2 shared Anna Moyseos· 1 shared Anne BonniniD· 1 shared Chang He· 1 shared Étori Aguiar MoreiraiD· 1 shared G. Tuba BarutiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersCancer Biology

Alberto ValdeolivasORCID

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2 papers

Recent·Most cited

Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumours and breast cancer

Demeter Túrós, Morgane Decollogny, Anna Moyseos, Astrid Chanfon, Myriam Siffert, Joanne Bousmar, Lou Romanens, Jean‐Christophe Tille, Olivier Trédan, Sana Intidhar Labidi‐Galy, Alberto Valdeolivas, Sven Rottenberg

This study maps the spatiotemporal organization of minimal residual disease in BRCA1-deficient mouse and human breast tumors, identifying a drug-tolerant EMT-like cell population linked to poor clinical outcomes.

Nature Communications · Jun 11, 2026Peer-reviewedCancer Biology

Deep learning-based 3D spatial transcriptomics with X-Pression

Demeter Túrós, Lollija Gladiseva, Marius Alexandru Botos, Chang He, G. Tuba Barut, Inês Berenguer Veiga, Nadine Ebert, Anne Bonnin, Astrid Chanfon, Llorenç Grau‐Roma, Alberto Valdeolivas, Sven Rottenberg, Volker Thiel, Étori Aguiar Moreira

X-Pression reconstructs 3D expression signatures from volumetric microcomputed tomography data, demonstrating its utility in analyzing vaccine efficacy and viral replication in mouse lungs.

bioRxiv · Mar 21, 2025 · PreprintBioinformatics