Author

B. J. Cole

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:experimental assay· 4 Organism:plant (other)· 4 Assay:bulk RNA-seq· 3 Assay:scRNA-seq· 3 Organism:Arabidopsis· 2 Research Focus:gene regulatory network inference· 2 Assay:metabolomics· 2

Frequent Co-Authors

C. N. Shulse· 2 shared D. E. Dickel· 2 shared G. M. Turco· 2 shared S. M. Brady· 2 shared A. Bilbao· 1 shared A. C. Kelikian· 1 shared A. H. C. Vlot· 1 shared A. P. Klein· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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2 shared papersPlant Biology

C. N. Shulse

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6 papers

Recent·Most cited

Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum

c. Baker, D. Patel, B. J. Cole, L. G. Ching, O. Dautermann, A. C. Kelikian, C. Allison, J. Pedraza, J. Sievert, A. Bilbao, J.-Y. Lee, Y.-M. Kim, J. E. Kyle, K. J. Bloodsworth, V. Paurus, , K. K. Niyogi

The paper investigates drought tolerance in sorghum by analyzing metabolomic, physiological, and transcriptomic responses to post-flowering drought in two genotypes.

bioRxiv · Jan 14, 2022Plant Biology

A single cell Arabidopsis root atlas reveals developmental trajectories in wild type and cell identity mutants

R. Shahan, C.-W. Hsu, T. M. Nolan, B. J. Cole, I. W. Taylor, A. H. C. Vlot, P. N. Benfey, U. Ohler

The paper constructs a single-cell atlas of Arabidopsis root development and identifies an alternative pathway for endodermal identity specification in mutants.

bioRxiv · Jun 29, 2020 · PreprintPlant Biology

Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation

K. J.-M. MacKinnon, B. J. Cole, C. Yu, J. H. Coomey, N. T. Hartwick, M.-S. Remigereau, T. Duffy, T. P. Michael, S. A. Kay, S. P. Hazen

This study identifies thermocycles as the primary cue for diurnal gene regulation in Brachypodium distachyon, showing that most rhythmic transcripts adjust their period in constant conditions.

bioRxiv · Nov 21, 2019Plant Biology

Molecular Mechanisms Driving Bistable Switch Behavior in Xylem Cell Differentiation

G. M. Turco, J. Rodriguez-Medina, S. Siebert, D. Han, H. Vahldick, C. N. Shulse, B. J. Cole, C. Juliano, D. E. Dickel, M. A. Savageau, S. M. Brady

The paper models the molecular mechanisms of bistable switching in xylem cell differentiation using whole root and single-cell data, identifying VND7's role and a novel regulatory cycle.

bioRxiv · Feb 8, 2019Plant Biology

Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass

J. Sasse, J. Kant, B. J. Cole, A. P. Klein, B. Arsova, P. Schlaepfer, J. Gao, K. Lewald, K. Zhalnina, S. Kosina, B. P. Bowen, D. Treen, J. Vogel, A. Visel, M. Watt, , T. R. Northen

The paper shows that Brachypodium distachyon consistently responds to soil conditions across labs, depleting soil metabolites and altering root morphology.

bioRxiv · Oct 5, 2018Plant Biology

High-throughput single-cell transcriptome profiling of plant cell types

C. N. Shulse, B. J. Cole, G. M. Turco, Y. Zhu, S. M. Brady, D. E. Dickel

The paper uses Drop-seq to profile over 4,000 single cells from Arabidopsis root tissue, identifying cell types and gene expression changes during endodermis development.

bioRxiv · Aug 29, 2018Plant Biology