Author

David Rogers

SiriusXT Ltd (Ireland)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Cell Biology· 2 Biophysics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Assay:imaging· 3 Research Focus:dimensionality reduction· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Jeremy C. SimpsoniD· 3 shared Sergey KapishnikoviD· 3 shared Stephen J. M. O'ConnoriD· 3 shared Charlotte de Ceuninck van CapelleiD· 2 shared Conal Mcintyre· 2 shared Martina Donnellan· 2 shared Mary Lopez-PereziD· 2 shared ShaoSen ChuehiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersCell Biology

Jeremy C. SimpsonORCID

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Author profile →

4 papers

Recent·Most cited

The Human Gut Cell Atlas v1.0: A Unified, Community-Built Reference of Cellular Diversity Across the Gut

Kyle Kimler, Christopher Lance, Balázs Bohár, Abdalla Ahmed, Ran RZ Zhou, Raquel Bartolomé-Casado, Victòria Gudiño, Ricardo O. Ramirez Flores, Fredrik V. Junghus, Urs Mörbe, Diana Domańska, Michaela F. Mueller, Madelyn R. Moy, Ángela Sanzo-Machuca, Marton L. Olbei, , Kathryn E. Hamilton

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

bioRxiv · Oct 12, 2026 · PreprintSystems Biology

Physics-aware resolution enhancement of soft X-ray tomography with measurement-supervised learning

ShaoSen Chueh, Eoghan Gallagher, Charlotte de Ceuninck van Capelle, Leo Luo, Takashi Ishikawa, Christopher Evans, Nicola F. Fletcher, Mary Lopez-Perez, David Rogers, Stephen J. M. O'Connor, Conal Mcintyre, Martina Donnellan, Paul Sheridan, Jeremy C. Simpson, Sergey Kapishnikov

This paper enhances the spatial resolution of soft X-ray tomography using physics-aware learning, improving structural fidelity and reducing radiation exposure.

bioRxiv · Sep 16, 2026 · PreprintCell Biology

Self-Supervised Missing Wedge Correction in Soft X-Ray Tomography: Towards Accurate Cellular Morphology and Volume Quantification

ShaoSen Chueh, Mary Lopez-Perez, Charlotte de Ceuninck van Capelle, Takashi Ishikawa, Alessandro Zannotti, Victoria A. Castro, Gema Calvo, Pablo Gastaminza, Conal Mcintyre, David Rogers, Stephen J. M. O'Connor, Martina Donnellan, Jeremy C. Simpson, Sergey Kapishnikov

This paper introduces a self-supervised model to correct missing wedge artifacts in soft X-ray tomography, improving volume quantification and morphology accuracy in cellular structures.

bioRxiv · Dec 25, 2025 · PreprintCell Biology

Demonstrating Soft X-Ray Tomography in the lab for correlative cryogenic biological imaging using X-rays and light microscopy

Stephen J. M. O'Connor, David Rogers, Maryna Kobylynska, James A. Geraets, Katja Thaysen, Jacob Marcus Egebjerg, Madeleen C. Brink, Louisa Herbsleb, Michaela Saláková, Leon Fuchs, Frauke Alves, Claus Feldmann, Axel A. Ekman, Paul J. Sheridan, William Fyans, , Sergey Kapishnikov

The paper demonstrates the SXT-100, a compact soft X-ray microscope, for correlative cryogenic biological imaging with high resolution and minimal sample damage.

Scientific Reports · Nov 27, 2025Peer-reviewedBiophysics