Author

De-Chang Yang

Peking University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 3 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Ge GaoiD· 4 shared Feng TianiD· 2 shared Lu SheniD· 2 shared Wei LiniD· 2 shared Zhi‐Jie CaoiD· 2 shared Alec R. ChapmaniD· 1 shared Ayjan Semayel· 1 shared David F. LeeiD· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBioinformatics

Ge GaoORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Quantitative model suggests both intrinsic and contextual features contribute to the transcript coding ability determination in cells

Yu-Jian Kang, Jingyi Li, Ke Lan, Shuai Jiang, De-Chang Yang, Mei Ling Hou, Ge Gao

The paper introduces RiboCalc, a model that quantitatively predicts transcript coding ability in human cells, revealing context-dependent coding transcripts.

Briefings in Bioinformatics · Oct 25, 2021Peer-reviewedBioinformatics

Cell BLAST: Searching large-scale scRNA-seq databases via unbiased cell embedding

Zhi‐Jie Cao, Wei Lin, Lu Shen, De-Chang Yang, Ge Gao

Cell BLAST provides a tool for querying and annotating scRNA-seq data using a reference database and web interface.

Nature Communications · Jul 10, 2020Peer-reviewedBioinformatics

Genomic Architecture of Cells in Tissues (GeACT): Study of Human Mid-gestation Fetus

Feng Tian, Fan Zhou, Xiang Li, Wenping Ma, Honggui Wu, Ming Yang, Alec R. Chapman, David F. Lee, Longzhi Tan, Dong Xing, Guangjun Yin, Ayjan Semayel, Jing Wang, Jia Wang, Wenjie Sun, , Xiaoliang Sunney Xie

The paper introduces GeACT, a genomic database for human mid-gestation fetus cells, linking gene expression to chromatin states and identifying key transcription factors.

bioRxiv · Apr 12, 2020 · PreprintGenomics

Decoding functional regulatory maps via genomic evolutionary footprints in 63 green plants

Feng Tian, De-Chang Yang, Yu-Qi Meng, Jinpu Jin, Ge Gao

The paper identifies over two million functional transcription factor interactions in 63 green plants using evolutionary footprints and a new algorithm.

Nucleic Acids Research · Oct 21, 2019Peer-reviewedBioinformatics