Author

E. Afshinnekoo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 3 Research Focus:host-pathogen & immune response· 3 Organism:human· 3 Assay:metagenomics· 3 Research Focus:database / resource· 2 Research Focus:differential expression· 2 Assay:proteomics· 2

Frequent Co-Authors

D. Bezdan· 4 shared C. E. Mason· 3 shared D. C. Danko· 3 shared D. J. Butler· 3 shared C. Bhattacharya· 2 shared C. Meydan· 2 shared C. Mozsary· 2 shared C. Westover· 2 shared

Activity by Year

2019-2021 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersMicrobiology

D. Bezdan

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

J. Park, J. Foox, T. Hether, D. Danko, S. Warren, Y. Kim, J. Reeves, D. J. Butler, C. Mozsary, J. Rosiene, A. Shaiber, E. Afshinnekoo, M. MacKay, Y. Bram, V. Chandar, , Schwar

This study identifies systemic tissue and cellular disruption from SARS-CoV-2 infection using autopsy and spatial omics data, showing tissue-specific damage and transcriptional changes.

bioRxiv · Mar 8, 2021 · PreprintMicrobiology

Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

D. C. Danko, D. Bezdan, E. Afshinnekoo, S. Ahsanuddin, C. Bhattacharya, D. J. Butler, K. R. Chng, D. Donnellan, J. Hecht, K. Jackson, K. Kuchin, M. Karasikov, A. Lyons, L. Mak, D. Meleshko, , Gr

The paper creates a global metagenomic atlas of urban microbial ecosystems, identifying novel species and geographic variation in antimicrobial resistance genes.

bioRxiv · Dec 2, 2020 · PreprintMicrobiology

Genetic and Immunological Evidence for Microbial Transfer Between the International Space Station and an Astronaut

D. C. Danko, N. K. Singh, D. J. Butler, C. Mozsary, P. Jiang, A. Keshavarzian, M. Maienschein-Cline, G. Chlipala, E. Afshinnekoo, D. Bezdan, F. Garrett-Bakelman, S. J. Green, F. W. Turek, M. H. Vitaterna, K. Venkateswaran, C. E. Mason

The paper tracks microbial transfer between an astronaut and the ISS environment, identifies specific taxa, and shows immune system adaptation.

bioRxiv · Nov 10, 2020 · PreprintMicrobiology

Cell-free DNA (cfDNA) and exosome profiling from a year-long humanspaceflight reveals circulating biomarkers

D. Bezdan, K. Grigorev, C. Meydan, F. Pelissier Vatter, M. Ciofi, V. Rao, K. Nakahira, P. Burnham, E. Afshinnekoo, C. Westover, D. Butler, C. Moszary, M. MacKay, J. Foox, T. Mishra, , C. Mason

This study profiles cfDNA and exosomes from an astronaut during a year-long spaceflight, identifying increased cf-mtDNA and exosomal brain-derived peptides as potential biomarkers of spaceflight-related stress.

bioRxiv · Nov 8, 2020Cell Biology

Ozone Treatment for Elimination of Bacteria and SARS-CoV-2 for Medical Environments

C. Westover, S. Rahmatulloev, D. Danko, E. Afshinnekoo, N. B. O'Hara, R. Ounit, D. Bezdan, C. E. Mason

This study evaluates ozone treatment's effectiveness in killing bacteria and degrading SARS-CoV-2 RNA on various surfaces.

bioRxiv · Jun 1, 2020 · PreprintMicrobiology

The Microbe Directory v2.0: An Expanded Database of Ecological and Phenotypical Features of Microbes.

M. A. Sierra, C. Bhattacharya, K. Ryon, S. Meierovich, H. Shaaban, D. Westfall, R. Mohammad, K. Kuchin, E. Afshinnekoo, D. C. Danko, C. E. Mason

The paper updates the Microbe Directory with new taxa, features, and tools for microbiome analysis, enabling better access to microbial data and discovery.

bioRxiv · Dec 20, 2019 · PreprintMicrobiology