Author

Ebru Kaymak

University of Massachusetts Chan Medical School

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:C. elegans· 2 Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Oliver J. RandoiD· 2 shared Alex M Tamburino· 1 shared Amy D Holdorf· 1 shared Ana BoškovićiD· 1 shared Carolina GalaniD· 1 shared Eric S. HaagiD· 1 shared Hans Tobias GustafssoniD· 1 shared Heather E. UptoniD· 1 shared

Activity by Year

2016-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersGenomics

Oliver J. RandoORCID

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4 papers

Recent·Most cited

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR

Hans Tobias Gustafsson, Carolina Galan, YU Tianxiong, Heather E. Upton, Lucas Ferguson, Ebru Kaymak, Zhiping Weng, Kathleen Collins, Oliver J. Rando

This study benchmarks the OTTR protocol for characterizing tRNAs and tRNA fragments in yeast and mouse, showing its accuracy and revealing new insights into sperm small RNA content.

eLife · Apr 25, 2025Peer-reviewedGenomics

Multi-modal regulation of C. elegans hermaphrodite spermatogenesis by the GLD-1-FOG-2 complex

Shuang Hu, Lauren E. Skelly, Ebru Kaymak, Lindsay Freeberg, Te‐Wen Lo, Scott Kuersten, Seán Ryder, Eric S. Haag

This study investigates the role of the GLD-1-FOG-2 complex in regulating C. elegans hermaphrodite spermatogenesis through multiple RNA-binding interactions and quantitative modeling.

Developmental Biology · Dec 29, 2018Peer-reviewedDevelopmental Biology

Control of noncoding RNA production and histone levels by a 5’ tRNA fragment

Ana Bošković, Xinyang Bing, Ebru Kaymak, Oliver J. Rando

The paper shows that tRF-GG regulates noncoding RNA production and histone levels, affecting MERVL element repression through U7 snRNA and RNA-binding proteins.

bioRxiv · Dec 17, 2018Molecular Biology

PRIMA: a gene-centered, RNA-to-protein method for mapping RNA-protein interactions

Alex M Tamburino, Ebru Kaymak, Shaleen Shrestha, Amy D Holdorf, Sean P Ryder, Marian (Albertha) Walhout

PRIMA is a method to map RNA-protein interactions by testing RNA baits against multiple RBPs, identifying both known and novel interactions in C. elegans.

bioRxiv · Sep 12, 2016Molecular Biology