Author

Francesco Campi

Helmholtz Munich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Marie PiraudiD· 2 shared Alexandra B. FirsovaiD· 1 shared Alexandros SountoulidisiD· 1 shared Ali ErtürkiD· 1 shared Ali Önder YildirimiD· 1 shared Anna Christina SchaariD· 1 shared Anna Lena JungiD· 1 shared Anne HilgendorffiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersCell Biology

Marie PiraudORCID

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Author profile →

2 papers

Recent·Most cited

Lifespan Analysis of the Lung Epithelium Reveals Inflammatory Reprogramming and Regenerative Decline

Gowtham Boosarpu, Eva M. Guenther, Carina Steinchen, M.C. Melo Narvaez, Camille Barro, Turgud Nazarli, Antonia Müller, Francesco Campi, Friso F Bratzel, Laura-Marie Twardowski, Qianjiang Hu, Efthymios Fousekis-Papakonstantinou, Roxana Maria Wasnick, Hosam Shams-Eldin, Anne Hilgendorff, , Mareike Lehmann

This study analyzes lung epithelial cells across the lifespan in mice, identifying age-related declines in regeneration linked to inflammation and epigenetic changes.

bioRxiv · Jun 4, 2026 · PreprintCell Biology

Probe set selection for targeted spatial transcriptomics

Louis Benedikt Kuemmerle, Malte D. Luecken, Alexandra B. Firsova, Lisa Barros de Andrade e Sousa, Lena J. Straßer, Ilhem Isra Mekki, Francesco Campi, Lukas Heumos, Maiia Shulman, Valentina Beliaeva, Soroor Hediyeh-zadeh, Anna Christina Schaar, Krishnaa T. A. Mahbubani, Alexandros Sountoulidis, Tamás Balassa, , Fabian Joachim Theis

Spapros selects optimal probe sets for targeted spatial transcriptomics to improve cell type identification and spatial variation detection across multiple datasets.

Nature Methods · Nov 18, 2024Peer-reviewedBioinformatics