Author

Gintaras Deikus

Icahn School of Medicine at Mount Sinai

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Microbiology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Robert SebraiD· 4 shared Gang FangiD· 3 shared Ali BashiriD· 2 shared Edward A. MeadiD· 2 shared Eric Schadt· 2 shared Shijia Zhu· 2 shared Aimee SheniD· 1 shared Alex Hastie· 1 shared

Activity by Year

2014-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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4 shared papersGenomics

Robert SebraORCID

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4 papers

Recent·Most cited

Cell-type-resolved NRXN1 isoforms across human brain tissues and hiPSC cortical organoids

Lei Cao, Yu Fan, Sadaf Ghorbani, Jessica Mariani, Yanchun Zhang, Michael B. Fernando, Jaroslav M. Bendl, John F. Fullard, Susana Isabel Ramos, Edward A. Mead, Nicola A.L. Hall, Gintaras Deikus, Kristin G Beaumont, Bohan Zhu, Sai Ma, , Gang Fang

The paper develops an integrative sequencing strategy to catalog NRXN1 isoforms across human brain tissues and hiPSC organoids, revealing cell-type-specific splicing patterns and therapeutic potential of ASO targeting.

bioRxiv · Nov 11, 2025 · PreprintNeuroscience

Epigenomic and functional characterization of a core DNA methyltransferase in the human pathogen Clostridium difficile

Pedro H. Oliveira, John W. Ribis, Elizabeth M. Garrett, Dominika Trzilova, Alex Kim, Ognjen Sekulović, Edward A. Mead, Theodore Pak, Shijia Zhu, Gintaras Deikus, Marie Touchon, Colleen Beckford, Nathalie E. Zeitouni, Deena Altman, Elizabeth Webster, , Gang Fang

This study characterizes the epigenome of C. difficile and identifies a conserved DNA methyltransferase that impacts sporulation and other biological processes.

bioRxiv · Jul 23, 2019 · PreprintGenomics

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Chris Mason, Noah Alexander, Dhruva Chandramohan, Elizabeth Henaff, Feng Chen, Erich Jaeger, Ali Moshrefi, , Sofia K

The paper presents extensive sequencing data from seven human genomes to serve as benchmark reference materials for improving sequencing technologies and variant calling.

bioRxiv · Dec 23, 2015Genomics

Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes

John Beaulaurier, Shijia Zhu, Robert Sebra, Xue-Song Zhang, Chaggai Rosenbluh, Gintaras Deikus, Nan Shen, Diana Munera, Matthew K Waldor, Martin Blaser, Andrew Chess, Eric Schadt, Gang Fang

This paper introduces a novel SMRT sequencing framework for single molecule-level detection of DNA methylation and epigenetic phasing in bacterial methylomes, revealing improved resolution and distinct epigenetic heterogeneity.

bioRxiv · Sep 17, 2014Microbiology