Author

Gregory Pepper

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:DNA methylation· 2 Approach:experimental assay· 2 Research Focus:variant calling· 2 Assay:metagenomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander L. GreningeriD· 3 shared Anne Cent· 2 shared Keith R. JeromeiD· 2 shared Amanda M. CastoiD· 1 shared Andrew R MackiD· 1 shared Anna WaldiD· 1 shared Christine JohnstoniD· 1 shared David M. KoelleiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Alexander L. GreningerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Six years of clinical herpes simplex virus genotypic acyclovir resistance testing confirms common resistance mechanisms and identifies novel mutations

Katharine H. D. Crawford, Jared Castor, Katrina LaTurner, Andrew R Mack, Gregory PEPPER, Alexander L. Greninger

This paper reviews six years of clinical HSV acyclovir resistance testing, confirming common resistance mechanisms and identifying 23 novel UL23 mutations.

bioRxiv · Jun 27, 2026 · PreprintMicrobiology

Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

Alexander L. Greninger, Pavitra Roychoudhury, Hong Jian Xie, Amanda M. Casto, Anne Cent, Gregory Pepper, David M. Koelle, Meei-Li W. Huang, Anna Wald, Christine Johnston, Keith R. Jerome

The paper develops tools to directly sequence HSV genomes from clinical samples with high sensitivity and low viral load, revealing limited evolution during cell culture.

mSphere · Jun 12, 2018Peer-reviewedGenomics

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection

Alexander L. Greninger, Gregory Pepper, Ryan C. Shean, Anne Cent, Isabel Palileo, Jane M. Kuypers, Joshua Tisdell Schiffer, Keith R. Jerome

The paper reports a large genomic deletion in human coronavirus 229E associated with myeloablation in a patient undergoing hematopoietic cell transplantation.

npj Genomic Medicine · Sep 26, 2017Peer-reviewedGenomics