Author

J. A. Segre

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

H. H. Kong· 3 shared K. P. Lemon· 3 shared S. Conlan· 3 shared NISC Comparative Sequencing Program· 2 shared A. A. Aksenov· 1 shared A. Almeida· 1 shared A. C. C. Obawemimo· 1 shared A. L. Byrd· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersMicrobiology

H. H. Kong

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Genomic characterization of the C. tuberculostearicum species complex, a ubiquitous member of the human skin microbiome

N. Ahmed, P. Joglekar, C. Deming, NISC Comparative Sequencing Program, K. P. Lemon, H. H. Kong, J. A. Segre, S. Conlan

This paper expands the genomic reference catalog of Corynebacterium species on human skin by sequencing isolates and analyzing metagenomic data, identifying two ribotypes and a potential new species.

bioRxiv · Jun 16, 2023Microbiology

Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses

T. H. Tran, I. F. Escapa, A. Q. Roberts, W. Gao, A. C. C. Obawemimo, J. A. Segre, H. H. Kong, S. Conlan, M. Kelly, K. P. Lemon

The paper analyzes the metabolic capabilities of four common human nasal Corynebacterium species using pangenomic data, finding high conservation of core metabolic functions across species and geographic strains.

bioRxiv · Jun 5, 2023Microbiology

A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae

C. K. Sim, S. Saheb Kashaf, S. Conlan, A. Stacy, D. M. Proctor, A. Almeida, N. Bouladoux, M. Chen, NISC Comparative Sequencing Program, R. D. Finn, Y. Belkaid, J. A. Segre

This study develops a mouse model to study occult colonization and antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae, identifying factors that predict susceptibility to outgrowth.

bioRxiv · Feb 24, 2021Microbiology

Cutibacterium acnes antibiotic production shapes niche competition in the human skin microbiome

J. Claesen, J. B. Spagnolo, S. Flores Ramos, K. L. Kurita, A. L. Byrd, A. A. Aksenov, A. V. Melnik, W. R. Wong, S. Wang, R. D. Hernandez, M. S. Donia, P. C. Dorrestein, H. H. Kong, J. A. Segre, R. G. Linington, , K. P. Lemon

The paper identifies cutimycin, an antibiotic produced by Cutibacterium acnes, which reduces Staphylococcus colonization in human skin follicles.

bioRxiv · Mar 30, 2019Microbiology