Author

J. Kaczmarczyk

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 3 Organism:human· 2 Approach:machine learning (classical)· 2 Assay:proteomics· 2 Approach:deep learning· 1

Frequent Co-Authors

A. Blum· 2 shared A. Sanecka-Duin· 2 shared B. Krol-Jozaga· 2 shared M. Jasinski· 2 shared P. Skoczylas· 2 shared V. Murcia Pienkowski· 2 shared Alexander MyronoviD· 1 shared Anna Sanecka-DuiniD· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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2 shared papersImmunology

A. Blum

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Identification of tumor-specific MHC ligands through improved biochemical isolation and incorporation of machine learning

S. Mecklenbräuker, P. Skoczylas, P. Biernat, B. Zaghla, B. Krol-Jozaga, M. Jasinski, V. Murcia Pienkowski, A. Sanecka-Duin, O. Popp, R. Szatanek, P. Mertins, J. Kaczmarczyk, A. Blum, M. G. Klatt

This paper improves the isolation of tumor-specific MHC ligands through hydrophobicity and post-translational modification considerations and introduces a machine learning model for predicting MHC ligand presentation.

bioRxiv · Jun 8, 2023 · PreprintImmunology

ARDitox: platform for the prediction of TCRs potential off-target binding

V. Murcia Pienkowski, T. Boschert, P. Skoczylas, A. Sanecka-Duin, M. Jasinski, B. Krol-Jozaga, G. Mazzocco, S. Stachura, L. Bunse, J. Kaczmarczyk, E. W. Green, A. Blum

ARDitox predicts TCR off-target binding using computational immunology and AI, identifying cross-reactive epitopes in cancer and viral targets.

bioRxiv · Apr 11, 2023 · PreprintImmunology

AI aided design of epitope-based vaccine for the induction of cellular immune responses against SARS-CoV-2

Giovanni Mazzocco, Iga Niemiec, Alexander Myronov, Piotr Skoczylas, J. Kaczmarczyk, Anna Sanecka-Duin, Katarzyna Gruba, Paulina Król, Michał Drwal, Marian Szczepanik, Krzysztof Pyrć, Piotr Stępniak

This paper uses AI and bioinformatics to design epitope-based vaccines for cellular immunity against SARS-CoV-2, evaluating immunogenicity and safety risks.

Frontiers in Genetics · Mar 25, 2021Peer-reviewedBioinformatics