Author

J. M. Gonzalez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Ecology· 3 Cell Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell type annotation· 4 Assay:metagenomics· 4 Research Focus:gene regulatory network inference· 3 Research Focus:host-pathogen & immune response· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:ecology & biodiversity· 2

Frequent Co-Authors

C. Pedros-Alio· 2 shared S. Robaina-Estevez· 2 shared A. Bachi· 1 shared A. Cardona· 1 shared A. F. Valencia· 1 shared A. Fominaya· 1 shared A. Gnocchi· 1 shared A. J. Lopez-Contreras· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersEcology

C. Pedros-Alio

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

Gene expression response to temperature acclimation in a model photoheterotrophic marine flavobacterium (Dokdonia sp. MED134)

S. Robaina-Estevez, J. M. Gonzalez, A. M. Cabello, A. S. Palacio, R. Gallagher, A. Lopez-Urrutia, L. Alonso-Saez

This study investigates how Dokdonia sp. MED134 adjusts its gene expression in response to temperature changes, identifying significant transcriptional shifts in stress response, translation, DNA replication, and metabolic pathways.

bioRxiv · Dec 25, 2023 · PreprintMicrobiology

Quantifying microbial guilds

J. Rivas-Santisteban, P. Yubero, S. Robaina-Estevez, J. M. Gonzalez, J. Tamames, C. Pedros-Alio

This paper introduces a framework to quantify microbial guilds using metagenomic data, focusing on functional protein sequences and their ecological roles in marine ecosystems.

bioRxiv · Jul 23, 2023Ecology

Cytogenetic evidence supports Avena insularis being closely related to hexaploid oats.

E. Ferrer, A. Fominaya, Y. Loarce, J. M. Gonzalez

The paper uses cytogenetic analysis to determine that Avena insularis is the most closely related progenitor to hexaploid oats.

PLOS ONE · Oct 15, 2021Peer-reviewedPlant Biology

Taxon-specific shifts in bacterial and archaeal transcription of dissolved organic matter cycling genes in a stratified fjord

B. pontiller, C. Perez-Martinez, C. Bunse, C. M. G. Osbeck, J. M. Gonzalez, D. Lundin, J. Pinhassi

The paper analyzes bacterial and archaeal transcription in a stratified fjord to show depth-related shifts in gene expression for organic matter processing and nutrient cycling.

bioRxiv · Jun 2, 2021Ecology

The potential of parrotfish faeces in replenishing reefs with coral-associated microbiome

T. M. Velasquez-Rodriguez, C. Zuluaga-Arias, S. M. Montano, J. M. Gonzalez, J. A. Sanchez

This study investigates the microbial composition of parrotfish faeces and its potential role in dispersing coral-associated bacteria and microalgae to reef sediments.

bioRxiv · Sep 15, 2020 · PreprintEcology

Dog Savior: Immediate Scent-Detection of SARS-COV-2 by Trained Dogs

O. Vesga, A. F. Valencia, A. Mira, F. Ossa, E. Ocampo, M. Agudelo Perez, k. Ciouderis, L. Perez, A. Cardona, Y. Aguilar Perez, J. M. Gonzalez, J. C. Catano Correa, Y. Agudelo Berruecos, J. P. Hernandez-Ortiz, J. E. Osorio

This study trains dogs to detect SARS-CoV-2 in respiratory samples with high accuracy, achieving strong performance metrics comparable to rRT-PCR.

bioRxiv · Jun 17, 2020 · PreprintMicrobiology

ATR expands embryonic stem cell fate potential in response to replication stress

S. Atashpaz, S. Samadi Shams, J. M. Gonzalez, E. Sebestyen, N. Arghavanifard, A. Gnocchi, E. Albers, S. Minardi, G. Faga, P. Soffientini, E. Allievi, V. Cancila, A. Bachi, O. Fernandez-Capetillo, C. Tripodo, , V. Costanzo

This study identifies an ATR-CHK1 pathway in ESCs that enhances fate potential by inducing 2C-like gene expression in response to replication stress.

bioRxiv · Jan 1, 2020Cell Biology

New peptides with immunomodulatory activity in macrophages and antibacterial activity against multiresistant Staphylococcus aureus

L. A. Barrero-Guevara, N. I. Bolanos, M. H. Parra, J. M. Gonzalez, H. Groot, C. Munoz-Camargo

This study evaluates eight new peptides for antibacterial and immunomodulatory activity against S. aureus and macrophages, showing promising results for potential therapeutic applications.

bioRxiv · Nov 11, 2019 · PreprintMicrobiology

Metabolic Architecture of the Deep Ocean Microbiome

S. G. Acinas, P. Sanchez, G. Salazar, F. M. Cornejo-Castillo, M. Sebastian, R. Logares, S. Sunagawa, P. Hingamp, H. Ogata, G. Lima-Mendez, S. Roux, J. M. Gonzalez, J. M. Arrieta, I. S. Alam, A. Kamau, , J. M. Gasol

The paper analyzes deep ocean microbial metagenomes to reveal functional diversity and metabolic strategies in the dark ocean.

bioRxiv · May 13, 2019Microbiology