Author

J. N. Paulson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

E. D. Scully· 2 shared J. Rocha· 2 shared L. R. Shapiro· 2 shared V. Klepac-Ceraj· 2 shared A. Cibrian-Jaramillo· 1 shared A. Isaacs· 1 shared A. Rahnavard· 1 shared A. Shi· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersEcology

E. D. Scully

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Type IV pili is a critical virulence factor in clinical isolates of Paenibacillus thiaminolyticus

C. Hehnly, A. Shi, P. Ssentongo, L. Zhang, A. Isaacs, S. U. Morton, N. Streck, P. Erdmann-Gilmore, I. Tolstoy, R. R. Townsend, D. D. Limbrick, J. N. Paulson, J. E. Ericson, M. Y. Galperin, S. J. Schiff, J. R. Broach

The paper identifies type IV pili as a critical virulence factor in Paenibacillus thiaminolyticus clinical isolates associated with postinfectious hydrocephalus.

bioRxiv · Jan 24, 2022 · PreprintMicrobiology

{-}Multivariable Association Discovery in Population-scale Meta-omics Studies

H. Mallick, A. Rahnavard, L. J. McIver, S. Ma, Y. Zhang, L. H. Nguyen, T. L. Tickle, G. Weingart, B. Ren, E. H. Schwager, S. Chatterjee, K. N. Thompson, J. E. Wilkinson, A. Subramanian, Y. Lu, , C. Huttenhower

This paper introduces MaAsLin 2, a method for analyzing multivariable associations in microbial multi-omics data, and applies it to reveal new insights into inflammatory bowel disease.

bioRxiv · Jan 20, 2021Microbiology

Bacterial communities of herbivores and pollinators that have co-evolved Cucurbita spp.

L. R. Shapiro, M. Youngblom, E. D. Scully, J. Rocha, J. N. Paulson, V. Klepac-Ceraj, A. Cibrian-Jaramillo, M. M. Lopez-Uribe

The paper characterizes gut bacterial communities of herbivorous and pollinating insects co-evolved with Cucurbita plants, finding high variability and shared common taxa across species.

bioRxiv · Jul 3, 2019 · PreprintEcology

An introduced crop plant is driving diversification of the virulent bacterial pathogen Erwinia tracheiphila

L. R. Shapiro, J. N. Paulson, B. J. Arnold, E. D. Scully, O. Zhaxybayeva, N. Pierce, J. Rocha, V. Klepac-Ceraj, K. Holton, R. Kolter

The paper sequenced E. tracheiphila genomes to show introduced cucumber plants drive its diversification into distinct lineages.

bioRxiv · Jun 12, 2018Evolutionary Biology