Author

J. Troncoso

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 2 Biochemistry· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:statistical model· 4 Organism:human· 3 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

C. Chen· 2 shared D. J. Tward· 2 shared E. Xu· 2 shared K. Stouffer· 2 shared M. Albert· 2 shared M. Witter· 2 shared S. Mori· 2 shared A. M. Segall· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioengineering

C. Chen

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Thioflavin T In-gel Stain to Study Protein Misfolding in Frozen Tissue Specimens

J. Oldam, I. Tchernyshyov, J. Van Eyk, J. Troncoso, C. G. Glabe, G. Agnetti

The paper introduces a Thioflavin T in-gel staining method for quantifying and characterizing amyloid species in frozen tissue samples, highlighting its simplicity, cost-effectiveness, and compatibility with downstream analyses.

bioRxiv · May 12, 2023 · PreprintBiochemistry

Transcriptome landscape of kleptoplastic sea slug Elysia viridis

M. Mendoza, S. Rocha, J. Troncoso, D. Posada, C. A. Canchaya

This study reports the transcriptome of the kleptoplastic sea slug Elysia viridis, identifying genes related to stress response and ROS quenching, and functional annotations for a large portion of its protein-coding sequences.

bioRxiv · Jun 28, 2022 · PreprintEvolutionary Biology

Amygdalar and ERC Rostral Atrophy and Tau Pathology Reconstruction in Preclinical Alzheimer's Disease

K. Stouffer, C. Chen, S. Kulason, E. Xu, M. Witter, C. Ceritoglu, M. Albert, S. Mori, J. Troncoso, D. J. Tward, M. I. Miller

This study measures amygdala and ERC atrophy rates in preclinical Alzheimer's disease using MRI and reconstructs 3D tau pathology distributions, finding amygdala atrophy comparable to ERC and suggesting it as a potential biomarker.

bioRxiv · Jun 6, 2022 · PreprintBioengineering

Projective LDDMM: Spatially Reconstructing a Story of Rostrally-Dominant Tau in Alzheimer's Disease

K. Stouffer, M. Witter, C. Chen, E. Xu, M. Albert, S. Mori, J. Troncoso, D. J. Tward, M. Miller

The paper aligns 2D histology images of AD pathology with 3D MRI to reconstruct NFT density in the MTL, finding high NFT density in the rostral hippocampus and adjacent regions.

bioRxiv · Mar 16, 2022 · PreprintBioengineering

Discovery of several thousand highly diverse circular DNA viruses

M. J. Tisza, D. V. Pastrana, N. L. Welch, B. Stewart, A. Peretti, G. J. Starrett, Y.-Y. S. Pang, S. R. Krishnamurthy, P. A. Pesavento, D. H. McDermott, P. M. Murphy, J. L. Whited, B. Miller, J. M. Brenchley, S. P. Rosshart, , C. B. Buck

The paper identifies and characterizes thousands of new circular DNA viruses from animal samples using a bioinformatics pipeline and artificial neural networks.

bioRxiv · Sep 17, 2019Microbiology