Author

M. Mendoza

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 5 Microbiology· 2 Biochemistry· 1 Biophysics· 1 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 6 Approach:experimental assay· 5 Organism:yeast· 5 Research Focus:cell signaling & trafficking· 4 Research Focus:development & morphogenesis· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2

Frequent Co-Authors

A. Kumar· 2 shared J. Aliaga· 2 shared J. Coit· 2 shared L. B. Carey· 2 shared M. Soto· 2 shared R. Calderon· 2 shared T. Sanmartin· 2 shared A. Battola· 1 shared

Activity by Year

2017-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersCell Biology

A. Kumar

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11 papers

Recent·Most cited

Transcriptome landscape of kleptoplastic sea slug Elysia viridis

M. Mendoza, S. Rocha, J. Troncoso, D. Posada, C. A. Canchaya

This study reports the transcriptome of the kleptoplastic sea slug Elysia viridis, identifying genes related to stress response and ROS quenching, and functional annotations for a large portion of its protein-coding sequences.

bioRxiv · Jun 28, 2022 · PreprintEvolutionary Biology

Computational model of 3D cell migration based on the molecular clutch mechanism

S. Campbell, R. Zitnay, M. Mendoza, T. C. Bidone

The paper develops a computational model to study how ECM microstructure affects 3D cell migration through force-sensitive molecular clutches, finding that pore size and porosity influence migration speed.

bioRxiv · Sep 29, 2021 · PreprintBiophysics

Nuclear Pore Complex Acetylation Regulates mRNA Export and Cell Cycle Commitment in Budding Yeast

M. Gomar-Alba, V. Pozharskaia, C. Schaal, A. Kumar, B. Jacquel, G. Charvin, J. C. Igual, M. Mendoza

The paper shows that Esa1 acetylates Nup60 to regulate mRNA export and cell cycle progression in budding yeast.

bioRxiv · Sep 1, 2021Cell Biology

A dynamic and combinatorial histone code drives malaria parasite asexual and sexual development

H. von Grüning, M. Coradin, M. Mendoza, J. Reader, S. Sidoli, B. Garcia, L.-M. Birkholtz

This study identifies novel histone PTMs and their combinatorial interactions in Plasmodium falciparum, revealing their role in regulating gene expression during asexual and sexual development.

bioRxiv · Jul 19, 2021Biochemistry

Detection of Mycobacterium tuberculosis in pediatric stool samples using TruTip technology

A. W. Mesman, M. Soto, J. Coit, R. Calderon, J. Aliaga, N. R. Pollock, M. Mendoza, F. M. Mestanza, C. J. Mendoza, M. B. Murray, L. Lecca, R. Holmberg, M. F. Franke

This study evaluates TruTip technology for detecting Mycobacterium tuberculosis in pediatric stool samples, achieving 59% sensitivity and 97% specificity for TB diagnosis.

bioRxiv · Mar 12, 2019Microbiology

How to make more from exposure data? An integrated machine learning pipeline to predict pathogen exposure

N. Fountain-Jones, G. Machado, S. Carver, C. Packer, M. Mendoza, M. E. Craft

This paper develops a machine learning framework to predict pathogen exposure in wild lions using ecological data, finding non-linear patterns and variable interactions that improve predictive performance.

bioRxiv · Mar 6, 2019Ecology

Mycobacterium tuberculosis detection from oral swabs with Xpert MTB/RIF ULTRA: A pilot study

A. Mesman, R. Calderon, M. Soto, J. Coit, J. Aliaga, M. Mendoza, M. Franke

This study evaluates the sensitivity of detecting Mycobacterium tuberculosis in oral swabs using Xpert MTB/RIF ULTRA, finding 45% sensitivity and 100% specificity compared to sputum liquid culture.

bioRxiv · Feb 24, 2019Microbiology

Impact of chromosome fusions on 3D genome organization and gene expression in budding yeast

M. Di Stefano, F. Di Giovanni, D. Bau, L. B. Carey, M. A. Marti-Renom, M. Mendoza

The paper examines how chromosome fusions in budding yeast affect 3D genome organization and gene expression, finding localized increases in gene expression near fusion sites.

bioRxiv · Nov 9, 2018Cell Biology

Budding yeast complete DNA replication after chromosome segregation begins

T. Ivanova, M. Maier, A. Missarova, C. Ziegler-Birling, L. B. Carey, M. Mendoza

The paper shows that DNA replication in budding yeast finishes during anaphase, linked to decreased cyclin-Cdk activity, and correlates with increased mutation rates.

bioRxiv · Sep 5, 2018Cell Biology

Cell-specific modulation of nuclear pore complexes controls cell cycle entry during asymmetric division

A. Kumar, P. Sharma, Z. Shcheprova, A. Daulny, T. Sanmartin, I. Matucci, C. Funaya, M. Beato, M. Mendoza

The paper identifies a mechanism where Hos3-mediated NPC deacetylation in budding yeast daughter cells delays cell cycle entry by regulating transcriptional repression and gene silencing.

bioRxiv · Oct 14, 2017Cell Biology

Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast

A. Masgrau, A. Battola, T. Sanmartin, L. P. Pryszcz, T. Gabaldon, M. Mendoza

This study identifies distinct roles of Boi1 and Boi2 in budding yeast, showing Boi1/2's role in exocytosis and Boi2's role in abscission inhibition during cytokinesis.

bioRxiv · Jun 18, 2017Cell Biology