Author

J. Voznica

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:phylogenetics / evolution· 2 Research Focus:host-pathogen & immune response· 1 Assay:imaging· 1 Approach:microscopy & imaging analysis· 1 Organism:mouse· 1

Frequent Co-Authors

E. Rousseau· 2 shared H. Morlon· 2 shared R. Andino· 2 shared S. Bianco· 2 shared S. Lambert· 2 shared Y. Shirogane· 2 shared A. Catching· 1 shared A. Dufour· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersMicrobiology

E. Rousseau

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Author profile →

5 papers

Recent·Most cited

A Comparison of Deep Learning Architectures for Inferring Parameters of Diversification Models from Extant Phylogenies

I. Lajaaiti, S. Lambert, J. Voznica, H. Morlon, F. Hartig

This study compares deep learning architectures for inferring diversification model parameters from phylogenies, finding that CNNs and RNNs with LTTs outperform other methods for CRBD, while BISSE requires topology and tip states.

bioRxiv · Mar 3, 2023 · PreprintEcology

Deep Learning from Phylogenies for Diversification Analyses

S. Lambert, J. Voznica, H. Morlon

This paper applies deep learning to diversification analysis using phylogenies, achieving accuracy comparable to likelihood-based methods but with significantly faster computation.

bioRxiv · Sep 27, 2022Evolutionary Biology

Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome

R. Andino, Y. Shirogane, E. Rousseau, J. Voznica, Y. Xiao, W. Su, A. Catching, Z. J. Whitfiled, I. M. Rouzine, S. Bianco

The paper investigates how defective interfering genomes affect wild-type poliovirus replication using a mathematical model and experimental data, finding that DI replication and encapsidation are key factors in determining viral competition outcomes.

bioRxiv · Jan 11, 2021Microbiology

Experimental and mathematical insights on the competition between poliovirus and a defective interfering genome

Y. Shirogane, E. Rousseau, J. Voznica, I. Rouzine, S. Bianco, R. Andino

The paper models the competition between poliovirus and defective interfering genomes, finding DI replicates faster but establishes an equilibrium with WT, reducing WT virion concentration by 5x.

bioRxiv · Jan 13, 2019 · PreprintMicrobiology

Identifying Parameters Of Host Cell Vulnerability During Salmonella Infection By Quantitative Image Analysis And Modeling

J. Voznica, C. Gardella, I. Belotserkovsky, A. Dufour, J. Enninga, V. Stevenin

The paper identifies two sources of host cell vulnerability to Salmonella infection using image analysis and modeling, linking morphological and molecular parameters to infection success.

bioRxiv · May 17, 2017Microbiology