Author

Jasmine Halliwell

Wellcome Sanger Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Immunology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Benjamin M. RumneyiD· 3 shared Hon Man Chan· 3 shared Omer Ali BayraktariD· 3 shared Cecilia Katunge KyanyaiD· 2 shared Fani MemiiD· 2 shared Holly Anderson· 2 shared Josephine M. BryantiD· 2 shared Kenny RobertsiD· 2 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Benjamin M. RumneyORCID

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Author profile →

3 papers

Recent·Most cited

Multi-scale modeling of human tissues from spatial transcriptomics with TERRA

Sebastian Birk, Mohammad Vali Sanian, Amirhossein Vahidi, Samuel Ogden, Daniyal J. Jafree, Adib Miraki Feriz, Carlo Leonardi, Arpit Merchant, Zichen He, Lloyd Steele, Adam R. Boxall, Marta Rosa Sallese, Jonas Maaskola, Ciro Ramírez-Suástegui, Sevda Öğüt, , Mohammad Lotfollahi

TERRA is a foundation model for spatial transcriptomics that predicts tissue behavior under perturbation and identifies multi-scale biological insights across tissues.

bioRxiv · Aug 4, 2026 · PreprintGenomics

A multimodal interrogation of Broca's area in the pediatric and adult human brain

Juan Moriano, Tanzila Mukhtar, Jimmy Tsz Hang Lee, Fani Memi, Jonathan J. Augustin, Rachel Leonard, Joseph J. Asfouri, I-Ling Lu, Clara Siebert, Jennifer Ja-Yoon Choi, Guolong Zuo, Yinshui Chang, Stanislaw Makarchuk, Elina Ziyu Jin, Martin Prete, , Arnold R. Kriegstein

The paper provides a high-resolution molecular and cellular analysis of Broca's area and motor cortex across developmental stages, identifying distinct cellular signatures and vulnerabilities to neurodevelopmental disorders.

bioRxiv · Jul 23, 2026 · PreprintNeuroscience

Spatial lung niches shape Pseudomonas aeruginosa persistence

Cecilia Katunge Kyanya, Duy Pham, Nana-Jane Chipampe, Phumrapee Boonklang, Louise Ellison, Andrew J. Balmer, Catherine Tudor, Jasmine Halliwell, Hon Man Chan, Vanessa Bonita Pereira, Benjamin M. Rumney, Holly Anderson, Shevaniee Umamaheswaran, Mia Franulović, Terry K. Judah, , Josephine M. Bryant

This study uses spatial transcriptomics to map Pseudomonas aeruginosa niches in lung tissue from CF and COPD patients, revealing distinct bacterial states and host interactions linked to infection persistence.

bioRxiv · Jul 7, 2026 · PreprintImmunology