Author

Joe Raymond

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ajamete KaykasiD· 1 shared Aleksandar MilosavljeviciD· 1 shared Alexander DobiniD· 1 shared Alexandra Scavelli· 1 shared Ali MortazaviiD· 1 shared Ana BertheliD· 1 shared Anna V VlasovaiD· 1 shared Annick WaldtiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Ajamete KaykasORCID

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2 papers

Recent·Most cited

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Joel S. Rozowsky, Jiahao Gao, Beatrice Borsari, Yucheng Yang, Timur R. Galeev, Gamze Gürsoy, Charles B. Epstein, Kun Xiong, Jinrui Xu, Tianxiao Li, Jason J. Liu, Keyang Yu, Ana Berthel, Zhanlin Chen, Fábio C. P. Navarro, , B Bernstein

The paper introduces the EN-TEx resource, which provides personal epigenomes and variant-impact models across multiple tissues, revealing allele-specific loci and their associations with GWAS loci.

Cell · Mar 1, 2023Peer-reviewedGenomics

CellSIUS provides sensitive and specific detection of rare cell populations from complex single cell RNA-seq data

Rebekka Wegmann, Marilisa Neri, Sven Schuierer, Bilada Bilican, Huyen Hartkopf, Florian Nigsch, Felipa Mapa, Annick Waldt, Rachel Cuttat, Max R. Salick, Joe Raymond, Ajamete Kaykas, Guglielmo Roma, Caroline Gubser Keller

The paper benchmarks scRNA-seq methods and introduces CellSIUS, a tool that improves detection of rare cell populations and identifies their functional signatures in human stem cell differentiation.

Genome biology · Jul 17, 2019Peer-reviewedBioinformatics