Author

Junqi Pan

The University of Melbourne

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Andrew J. DeansiD· 1 shared Andrew P. ThompsoniD· 1 shared Anthony T. PapenfussiD· 1 shared Clare L. ScottiD· 1 shared Dylan SilkeiD· 1 shared Elaine SanijiD· 1 shared Isabelle S. LucetiD· 1 shared Jiachen Xuan· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperMolecular Biology

Andrew J. DeansORCID

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Author profile →

2 papers

Recent·Most cited

ProteinDJ: a high-performance and modular protein design pipeline

Dylan Silke, Julie Iskander, Junqi Pan, Andrew P. Thompson, Anthony T. Papenfuss, Isabelle S. Lucet, Joshua M. Hardy

ProteinDJ is a high-performance protein design pipeline that enables efficient generation and testing of synthetic protein binders using HPC systems.

Protein Science · Jan 21, 2026Peer-reviewedBioinformatics

Local nucleolar surveillance mechanisms maintain rDNA stability

Ruofei Liu, Jiachen Xuan, Junqi Pan, Shalini Sundramurthi Chelliah, Rhynelle Dmello, Karla J. Cowley, Shannon Mendez, Yangyi Zhang, Kezia Gitareja, Matthew Wakefield, Andrew J. Deans, Clare L. Scott, Keefe T. Chan, Kaylene J. Simpson, Jian Kang, Elaine Sanij

This study identifies localized nucleolar surveillance mechanisms that respond to rDNA damage by activating the nucleolar DNA damage response (nDDR) through R-loop formation and RAD54L protection.

bioRxiv · Jan 20, 2025 · PreprintMolecular Biology