Author

Kavita Pandhare

Institute of Genomics and Integrative Biology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Assay:whole-genome sequencing· 4 Organism:human· 3 Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-exome sequencing· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Mercy RophinaiD· 5 shared Vinod ScariaiD· 5 shared Bani JollyiD· 2 shared Mohamed ImraniD· 2 shared Mukta Poojary· 2 shared Abhinav K. JainiD· 1 shared Aditi Mhaske· 1 shared Afra ShamnathiD· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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5 shared papersBioinformatics

Mercy RophinaORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A comprehensive characterization of blood group antigen variants in the Middle Eastern population genomes - Insights into genetic epidemiology

Mercy Rophina, Kavita Pandhare, Vinod Scaria

This study characterizes blood group antigen variants in Middle Eastern populations using genomic data, identifies clinically significant alleles, and develops an online resource for transfusion research.

medRxiv · Nov 20, 2023 · PreprintGenetic & Genomic Medicine

DystoGen Compendium: A comprehensive resource of ACMG annotated movement disorder associated genetic variants

Bhaskar Jyoti Saikia, Utkarsh Gaharwar, Mukta Poojary, Aditi Mhaske, Sangita Chowdhury Paul, Mukesh Kumar, Srishti Sharma, Kavita Pandhare, Shivanshi Rastogi, Medhavi Karal, Mercy Rophina, Vinod Scaria, Balachandran Krishnamma Binukumar

The paper curates and annotates 5118 pathogenic/likely pathogenic variants from 118 movement disorder-associated genes using ACMG & AMP guidelines, creating a comprehensive online compendium called DystoGen.

bioRxiv · Oct 31, 2023 · PreprintBioinformatics

BGvar - a comprehensive resource for blood group immunogenetics

Mercy Rophina, Kavita Pandhare, Sudhir Jadhao, Shivashankar Hiriyur Nagaraj, Vinod Scaria

BGvar compiles and curates blood group-related genomic variants into a resource for genomic analysis of blood group antigens.

Transfusion Medicine · Dec 13, 2021Peer-reviewedGenomics

ESC - a comprehensive resource for SARS-CoV-2 immune escape variants

Mercy Rophina, Kavita Pandhare, Afra Shamnath, Mohamed Imran, Bani Jolly, Vinod Scaria

The paper builds a database of SARS-CoV-2 immune escape variants, curating 5258 variants tested against 230 antibodies, plasma, and vaccine breakthroughs.

Nucleic Acids Research · Oct 10, 2021Peer-reviewedBioinformatics

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing

Rahul C. Bhoyar, Abhinav K. Jain, Paras Sehgal, Mohit Kumar Divakar, Disha Sharma, Mohamed Imran, Bani Jolly, Gyan Ranjan, Mercy Rophina, Sumit Sharma, Sanjay Siwach, Kavita Pandhare, Swayamprabha Sahoo, Maheswata Sahoo, Ananya Nayak, , Sridhar Sivasubbu

This study evaluates the COVIDSeq protocol for SARS-CoV-2 detection and genetic epidemiology, showing high concordance with RT-PCR and identifying novel variants and lineages.

PLoS ONE · Feb 17, 2021Peer-reviewedGenomics