Author

Ken Yagi

RIKEN Center for Integrative Medical Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Yasushi OkazakiiD· 3 shared Chi Wai YipiD· 2 shared Chung-Chau HoniD· 2 shared Imad AbugessaisaiD· 2 shared Jay W. ShiniD· 2 shared Jessica SeveriniD· 2 shared Jordan A. RamilowskiiD· 2 shared Josée DostieiD· 2 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Yasushi OkazakiORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BCR, not TCR, repertoire diversity is associated with favorable COVID-19 prognosis

Faith Jessica Paran, Rieko Oyama, Abdullah Khasawneh, Tomohiko Ai, Hendra Saputra Ismanto, A. A. Sherif, Dianita S. Saputri, Chikako Ono, Mizue Saita, Satomi Takei, Yuki Horiuchi, Ken Yagi, Yoshiharu Matsuura, Yasushi Okazaki, Kazuhisa Takahashi, , Toshio Naito

This study finds that BCR repertoire diversity, not TCR diversity, correlates with favorable outcomes in COVID-19 patients.

Frontiers in Immunology · Oct 28, 2024Peer-reviewedImmunology

Antisense oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types

Chi Wai Yip, Chung-Chau Hon, Kayoko Yasuzawa, Divya Mundackal Sivaraman, Jordan A. Ramilowski, Youtaro Shibayama, Saumya Agrawal, Anika Vinayak Prabhu, Callum Parr, Jessica Severin, Yan Jun Lan, Josée Dostie, Andreas Petri, Hiromi Nishiyori-Sueki, Michihira Tagami, , Jay W. Shin

The paper performs knockdown of 200 lncRNAs in human iPS cells, identifies 36 with growth inhibition, and finds molecular phenotypes in 29.3% of cases, with higher agreement in molecular than cell growth phenotypes across cell types.

Cell Reports · Dec 1, 2022Peer-reviewedGenomics

Systematic identification of cis-interacting lncRNAs and their targets

Saumya Agrawal, Ivan V. Kulakovskiy, Jessica Severin, Masaru Koido, Tanvir Alam, Imad Abugessaisa, Andrey Buyan, Howard Y. Chang, Josée Dostie, Masayoshi Itoh, Juha Kere, Naoto Kondo, Yunjing Li, Vsevolod J. Makeev, Mickaël Mendez, , Michiel de Hoon

The paper identifies cis-interacting lncRNAs and their targets using RNA-chromatin and Hi-C data across 18 human cell types.

bioRxiv · Jan 13, 2021 · PreprintGenomics