Author

Kit A. Fuhrman

Nanostring Technologies (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Daniel R. ZollingeriD· 2 shared Joseph BeechemiD· 2 shared Robin FropfiD· 2 shared Alecksandr J. Kutchma· 1 shared Alexa E Lasley· 1 shared Alexander M. TsankoviD· 1 shared Andrew J. AguirreiD· 1 shared Andrew Klock· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Daniel R. ZollingerORCID

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3 papers

Recent·Most cited

g.nome, A Transparent Bioinformatics Pipeline that Enables Differential Expression and Alternative Splicing Analysis by Non-Computational Biologists

Rut Bryl, Krystal C. Johnson, Xiongbin Kang, Tao Wang, Kit A. Fuhrman, Mark Kunitomi, Nora Kearns, David R. Corey

bioRxiv · May 9, 2025 · PreprintBioinformatics

Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling

Stephanie M. Zimmerman, Robin Fropf, Bridget R. Kulasekara, Maddy Griswold, Oliver K. Appelbe, Arya J. Bahrami, Rich Boykin, Derek L. Buhr, Kit A. Fuhrman, Margaret L. Hoang, Quoc Huynh, Lesley Isgur, Andrew Klock, Alecksandr J. Kutchma, Alexa E Lasley, , Joseph Beechem

Multiplexed in situ hybridization pools against every protein-coding gene let Digital Spatial Profiling read whole transcriptomes from regions of ~10-500 cells in human and mouse tissue.

bioRxiv · Sep 29, 2021 · PreprintGenomics

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

William L. Hwang, Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul R. Mohan, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Orr Ashenberg, Samouil L. Farhi, Denis Schapiro, Jason Reeves, Daniel R. Zollinger, George M. Eng, Jason M. Schenkel, , Aviv Regev

This study uses single-nucleus and spatial transcriptomics to analyze pancreatic cancer before and after neoadjuvant treatment, revealing changes in cell states and immune infiltration that may inform therapy.

bioRxiv · Aug 25, 2020 · PreprintGenomics