Author

Mélanie Miranda

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:CITE-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Adeline DurandiD· 1 shared Alexandra Van KeymeuleniD· 1 shared Amélie LeforestieriD· 1 shared Amélie Viaene· 1 shared Andrea PapaleiD· 1 shared Anna A. KarpukhinaiD· 1 shared Cédric BlanpainiD· 1 shared Céline VallotiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Adeline DurandORCID

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2 papers

Recent·Most cited

Matched single-cell chromatin, transcriptome, and surface marker profiling captures in vivo epigenomic reprogramming during basal-to-luminal transition in the mammary gland

Anna A. Karpukhina, Eve Moutaux, Adeline Durand, Alexandra Van Keymeulen, Amélie Viaene, Mélanie Miranda, Louisa Hadj Abed, Simon Besson‐Girard, Marion Lambault, Délia Dupré, Gregoire Jouault, Mélissa Saichi, Juliette Bertorello, Simon Dumas, Mathias Schwartz, , Céline Vallot

The paper introduces OneCell CUT&Tag, a single-cell multi-omics method that captures chromatin, transcriptome, and surface marker data, revealing epigenomic reprogramming during mammary gland basal-to-luminal transition.

bioRxiv · Feb 17, 2026 · PreprintGenomics

A complex CTCF binding code defines TAD boundary structure and function

Li‐Hsin Chang, Sourav Ghosh, Andrea Papale, Jennifer M. Luppino, Mélanie Miranda, Vincent Piras, Jéril Degrouard, Joanne Edouard, Mallory Poncelet, Nathan Lecouvreur, Sébastien Bloyer, Amélie Leforestier, Eric F. Joyce, David Holcman, Daan Noordermeer

The paper reveals that CTCF binding at TAD boundaries is modular and clustered, challenging existing models of loop extrusion blocking and highlighting a complex code for TAD structure and function.

Nature Communications · Sep 12, 2023Peer-reviewedGenetics