Author

O. T. Schubert

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biochemistry· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Assay:proteomics· 3 Research Focus:cell type annotation· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

M. Ackermann· 2 shared R. Aebersold· 2 shared A. K. M. Stubbusch· 1 shared A. Stubbusch· 1 shared C. Magnabosco· 1 shared C. Pena· 1 shared E. Budinska· 1 shared E. E. Clerc· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMicrobiology

M. Ackermann

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Polysaccharide breakdown products drive degradation-dispersal cycles of foraging bacteria through changes in metabolism and motility

A. K. M. Stubbusch, J. M. Keegstra, J. Schwartzman, S. Pontrelli, E. E. Clerc, S. Charlton, R. Stocker, C. Magnabosco, O. T. Schubert, M. Ackermann, G. G. D'Souza

This study shows that marine bacteria switch from polysaccharide degradation to motility when exposed to breakdown products, enabling dispersal to new nutrient sources.

bioRxiv · Jul 14, 2023Microbiology

Effects of interspecies interactions on marine community ecosystem function

M. Daniels, A. Stubbusch, N. A. Held, O. T. Schubert, M. Ackermann

This study shows that interactions between microbial species affect chitin degradation rates through changes in chitinase expression, challenging the idea of unidirectional trophic cascades in microbial communities.

bioRxiv · Aug 26, 2022 · PreprintMicrobiology

Towards Synthetic PETtrophy: Engineering Pseudomonas putida for concurrent polyethylene terephthalate (PET) monomer metabolism and PET hydrolase expression

O. F. Brandenberg, O. T. Schubert, L. Kruglyak

This paper engineers Pseudomonas putida to metabolize PET monomers and express PET hydrolases, finding that extracellular enzyme expression can be achieved but often reduces host fitness.

bioRxiv · Apr 21, 2022Microbiology

Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry

P. Bouchal, O. T. Schubert, J. Faktor, L. Capkova, H. Imrichova, K. Zoufalova, V. Paralova, R. Hrstka, Y. Liu, H. A. Ebhardt, E. Budinska, R. Nenutil, R. Aebersold

This study uses SWATH mass spectrometry to classify breast cancer subtypes and identifies key proteins that improve patient stratification for precision medicine.

bioRxiv · Mar 26, 2019Cancer Biology

The GTPase Nog1 couples polypeptide exit tunnel quality control with ribosomal stalk assembly

P. Nerurkar, L. Gillet, C. Pena, O. T. Schubert, M. Altvater, Y. Chang, R. Aebersold, V. Panse

The paper shows Nog1 uses ATPase and GTPase activities to coordinate removal of Arx1 and Mrt4 from pre-60S ribosomes, linking PET quality control with ribosomal stalk assembly.

bioRxiv · Nov 5, 2018 · PreprintBiochemistry