Author

Olga Allen

Ginkgo Bioworks, Inc. (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ayla ErgüniD· 2 shared Aanal BhattiD· 1 shared Adam RosenbaumiD· 1 shared Alexander SmithiD· 1 shared Ali Faraj· 1 shared Amanda Riccardi· 1 shared Ammar ArsiwalaiD· 1 shared Anisha Nandy· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBiophysics

Ayla ErgünORCID

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2 papers

Recent·Most cited

A high-throughput platform for biophysical antibody developability assessment to enable AI/ML model training

Ammar Arsiwala, Rebecca Bhatt, Lood van Niekerk, Porfirio Quintero-Cadena, Xiang Ao, Adam Rosenbaum, Aanal Bhatt, Alexander Smith, Yaoyu Yang, KC Anderson, Lucía Daniela Grippo, Xing Cao, Rich Cohen, Jay Patel, Joshua Moller, , David W. Borhani

The paper introduces a high-throughput platform to generate large datasets for training machine learning models to predict antibody developability properties.

mAbs · Dec 2, 2025Peer-reviewedBiophysics

Mapping the Transcriptional Landscape of Drug Responses in Primary Human Cells Using High-Throughput DRUG-seq

Lauren M. Baugh, Sébastien Vigneau, Srijani Sridhar, Sarah A. Boswell, George Pilitsis, John Bradley, Olga Allen, Laura M. Rand, Amanda Riccardi, Kelsey Roach, Kevin Lema, Ayla Ergün

The paper develops DRUG-seq to profile drug responses in primary human cells, revealing shared and cell-type-specific transcriptional changes across multiple compounds and concentrations.

bioRxiv · Jun 3, 2025 · PreprintSystems Biology