Author

Srijani Sridhar

Ginkgo Bioworks, Inc. (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:drug response / drug discovery· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Aaron W. KollaschiD· 1 shared Alexandros Papadopoulos· 1 shared Ali Taghibakhshi· 1 shared Alicia Frame· 1 shared Amanda Riccardi· 1 shared Anne M. Bara· 1 shared Anthony Beardsworth CostaiD· 1 shared Ayla ErgüniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Aaron W. KollaschORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Designing AI-programmable therapeutics with the EDEN family of foundation models

Geraldene Munsamy, Gavin Ayres, Carla Greco, Keith Y K Kam, Gus Minto-Cowcher, John St John, Tanggis Bohnuud, Matthew H. Bakalar, William Chow, Robert J. Pecoraro, Marcelo D. T. Torres, Aaron W. Kollasch, Marcus H. Y. Leung, Hassan Sirelkhatim, Francesco Farina, , Philipp Lorenz

This paper introduces the EDEN family of foundation models for AI-programmable therapeutic design, demonstrating their ability to generate functional gene insertions, antibiotic peptides, and synthetic microbiomes.

bioRxiv · Feb 9, 2026 · PreprintGenomics

Mapping the Transcriptional Landscape of Drug Responses in Primary Human Cells Using High-Throughput DRUG-seq

Lauren M. Baugh, Sébastien Vigneau, Srijani Sridhar, Sarah A. Boswell, George Pilitsis, John Bradley, Olga Allen, Laura M. Rand, Amanda Riccardi, Kelsey Roach, Kevin Lema, Ayla Ergün

The paper develops DRUG-seq to profile drug responses in primary human cells, revealing shared and cell-type-specific transcriptional changes across multiple compounds and concentrations.

bioRxiv · Jun 3, 2025 · PreprintSystems Biology