Author

P. La Riviere

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 4 Biophysics· 1 Cell Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 5 Approach:deep learning· 4 Research Focus:dimensionality reduction· 3 Research Focus:imputation· 3 Organism:mouse· 3 Organism:C. elegans· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2

Frequent Co-Authors

H. Shroff· 4 shared Y. Wu· 4 shared A. Upadhyaya· 3 shared M. Guo· 3 shared R. Christensen· 3 shared Y. Su· 3 shared C. Combs· 2 shared C. Smith· 2 shared

Activity by Year

2017-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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4 shared papersBioengineering

H. Shroff

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy

M. Guo, Y. Wu, C. M. Hobson, Y. Su, S. Qian, E. Krueger, R. Christensen, G. Kroeschell, J. Bui, M. Chaw, L. Zhang, J. Liu, X. Hou, X. Han, Z. Lu, , H. Shroff

This paper introduces a deep learning method to correct optical aberrations in fluorescence microscopy, improving image quality and enabling better downstream analysis.

bioRxiv · Oct 15, 2023 · PreprintBioengineering

Sinogram Domain Angular Upsampling of Sparse-View Micro-CT with Dense Residual Hierarchical Transformer and Noise-Aware Loss

A. S. Adishesha, D. J. Vanselow, P. La Riviere, K. C. Cheng, S. X. Huang

This paper introduces a Dense Residual Hierarchical Transformer (DRHT) to recover high-quality sinograms from undersampled micro-CT scans, improving resolution and reducing artifacts.

bioRxiv · May 9, 2023 · PreprintBioengineering

Three-dimensional structured illumination microscopy with enhanced axial resolution

X. Li, Y. Wu, Y. Su, I. A. R. Suarez, C. Matthaeus, T. B. Updegrove, Z. Wei, L. Zhang, H. Sasaki, Y. Li, M. Guo, J. P. Giannini, H. D. Vishwasrao, J. Chen, S.-J. J. Lee, , H. Shroff

The paper introduces two methods to enhance axial resolution in 3D SIM microscopy, achieving isotropic resolution with minimal hardware changes and using deep learning for improved imaging.

Nature Biotechnology · Jan 26, 2023Peer-reviewedCell Biology

Model-free analysis in the spectral domain of postmortem mouse brain EPSI reveals inconsistencies with model-based analyses of the free induction decay

S. Trinkle, G. Wildenberg, N. Kasthuri, P. La Riviere, S. Foxley

This paper compares model-based and model-free spectral analysis of EPSI data from postmortem mouse brains, finding inconsistencies in spectral asymmetry and sensitivity to white-matter changes.

bioRxiv · Feb 24, 2022 · PreprintBiophysics

Multiview super-resolution microscopy

Y. Wu, X. Han, Y. Su, M. Glidewell, J. S. Daniels, J. Liu, T. Sengupta, I. Rey-Suarez, R. Fischer, A. Patel, C. Combs, J. Sun, X. Wu, R. Christensen, C. Smith, , H. Shroff

This paper introduces a multiview super-resolution microscopy approach that enhances confocal microscopy resolution and reduces phototoxicity across multiple scales.

bioRxiv · May 21, 2021 · PreprintBioengineering

Three-Dimensional Histology of Whole Zebrafish by Sub-Micron Synchrotron X-ray Micro-Tomography

Y. Ding, D. J. Vanselow, M. A. Yakovlev, S. R. Katz, A. Y. Lin, D. P. Clark, P. Vargas, X. Xin, J. E. Copper, V. A. Canfield, K. C. Ang, Y. Wang, X. Xiao, F. De Carlo, D. B. van Rossum, , K. C. Cheng

This paper develops a method to create 3D histological images of whole zebrafish using synchrotron X-ray micro-tomography, enabling cellular-resolution phenotyping without sectioning.

bioRxiv · Aug 25, 2018Pathology

Reflective imaging improves resolution, speed, andcollection efficiency in light sheet microscopy

Y. Wu, A. Kumar, C. Smith, E. Ardiel, P. Chandris, R. Christensen, I. Rey-Suarez, M. Guo, H. Vishwasrao, J. Chen, J. Tang, A. Upadhyaya, P. La Riviere, H. Shroff

This paper introduces a reflective imaging technique that enhances resolution, speed, and collection efficiency in light sheet microscopy without altering the microscope hardware.

bioRxiv · Jun 23, 2017Bioengineering