Author

S. J. Hoosdally

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 3 Research Focus:variant calling· 3 Research Focus:benchmarking· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

D. W. Crook· 5 shared A. S. Walker· 3 shared T. E. Peto· 3 shared A. L. Gibertoni Cruz· 2 shared A. T. M. Hubbard· 2 shared D. M. Cirillo· 2 shared D. S. Read· 2 shared E. Borroni· 2 shared

Activity by Year

2018-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersMicrobiology

D. W. Crook

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae

L. P. Shaw, K. K. Chau, J. Kavanagh, M. AbuOun, E. Stubberfield, H. S. Gweon, L. Barker, G. Rodger, M. J. Bowes, A. T. M. Hubbard, H. Pickford, J. Swann, D. Gilson, R. P. Smith, S. J. Hoosdally, , REHAB consortium

The paper analyzes the pangenome dynamics of Enterobacteriaceae from environmental sources, finding that plasmids carry more AMR genes and are influenced by niche and geography rather than phylogeny.

Science Advances · Apr 9, 2021Peer-reviewedMicrobiology

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

H. S. Gweon, L. P. Shaw, J. Swann, N. De Maio, M. AbuOun, A. T. M. Hubbard, M. J. Bowes, M. J. Bailey, T. E. A. Peto, S. J. Hoosdally, A. S. Walker, R. P. Sebra, D. W. Crook, M. Anjum, D. S. Read, , The REHAB consortium

This study evaluates how sequencing depth affects taxonomic composition and AMR gene detection in metagenomic samples, finding that higher depth is needed for AMR gene richness.

bioRxiv · Mar 31, 2019Microbiology

MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

S. George, Y. Xu, N. Sanderson, A. T. Hubbard, D. T. Griffiths, M. Morgan, L. Pankhurst, S. J. Hoosdally, D. Foster, S. Thulborn, E. Robinson, E. G. Smith, P. Rathod, A. S. Walker, T. E. Peto, , K. E. Dingle

This study evaluates the effectiveness of multiple displacement amplification followed by MinION sequencing for detecting Mycobacteria DNA in sputum samples.

bioRxiv · Dec 7, 2018 · PreprintMicrobiology

Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis

P. M. Rancoita, F. Cugnata, A. L. Gibertoni Cruz, E. Borroni, S. J. Hoosdally, T. M. Walker, C. Grazian, T. J. Davies, T. E. Peto, D. W. Crook, P. W. Fowler, D. M. Cirillo, the CRyPTIC Consortium

The paper validates a 14-drug microtitre plate for measuring MICs of anti-TB compounds in M. tuberculosis isolates, finding optimal reading with the Vizion system after 14 days incubation.

bioRxiv · Jun 15, 2018Microbiology

Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis

P. W. Fowler, A. L. Gibertoni Cruz, S. J. Hoosdally, L. Jarrett, E. Borroni, M. Chiacchiaretta, P. Rathod, T. M. Walker, E. Robinson, T. E. Peto, D. M. Cirillo, E. G. Smith, D. W. Crook

This paper introduces AMyGDA, a software tool for automated detection of M. tuberculosis growth on 96-well plates to determine drug susceptibility.

bioRxiv · Jun 15, 2018Microbiology